RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 GJB6O95452 261 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 KRT3P12035 628 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 SLC1A1P43005 524 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 ALDH7A1P49419 539 aaKnown RBP22.17■■□□□ 1.14
VPS28-208ENST00000527797 DNA2P51530 1060 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 BCAR1P56945 870 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 MAPRE1Q15691 268 aaKnown RBP22.17■■□□□ 1.14
VPS28-208ENST00000527797 OR6B2Q6IFH4 312 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 BADQ92934 168 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 ZNF689Q96CS4 500 aaPredicted RBP22.17■■□□□ 1.14
VPS28-208ENST00000527797 PCED1BQ96HM7 432 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 HSFY1Q96LI6 401 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 MCEEQ96PE7 176 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 PSMB7Q99436 277 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 CARD6Q9BX69 1037 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 TRIM7Q9C029 511 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 CYLDQ9NQC7 956 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 IP6K2Q9UHH9 426 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 MIF4GDA9UHW6 222 aaKnown RBP22.17■■□□□ 1.14
VPS28-208ENST00000527797 SPOPO43791 374 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 PROSCO94903 275 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 FGBP02675 491 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 FAM200BP0CF97 657 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 NPR3P17342 541 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 ACADSBP45954 432 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 PLA2G4AP47712 749 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 RPL7AP62424 266 aaKnown RBP22.17■■□□□ 1.14
VPS28-208ENST00000527797 FPGSQ05932 587 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 FAM171A1Q5VUB5 890 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 FAM117BQ6P1L5 589 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 OTOP2Q7RTS6 562 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 FAM35AQ86V20 835 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 MNS1Q8NEH6 495 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 MYRIPQ8NFW9 859 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 OR10T2Q8NGX3 314 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 GPR62Q9BZJ7 368 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 CWH43Q9H720 699 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 NT5C1B-RDH14C9J2C7 533 aa22.16■■□□□ 1.14
VPS28-208ENST00000527797 CXCR5P32302 372 aa22.16■■□□□ 1.14
VPS28-208ENST00000527797 RPL34P49207 117 aaKnown RBP22.16■■□□□ 1.14
VPS28-208ENST00000527797 TERF1P54274 439 aa22.16■■□□□ 1.14
VPS28-208ENST00000527797 FUT10Q6P4F1 479 aa22.16■■□□□ 1.14
VPS28-208ENST00000527797 CEP57Q86XR8 500 aa22.16■■□□□ 1.14
VPS28-208ENST00000527797 C7orf61Q8IZ16 206 aa22.16■■□□□ 1.14
VPS28-208ENST00000527797 CEP112Q8N8E3 955 aa22.16■■□□□ 1.14
VPS28-208ENST00000527797 COG1Q8WTW3 980 aa22.16■■□□□ 1.14
VPS28-208ENST00000527797 MYLPFQ96A32 169 aa22.16■■□□□ 1.14
VPS28-208ENST00000527797 CAPZA3Q96KX2 299 aa22.16■■□□□ 1.14
VPS28-208ENST00000527797 PKMYT1Q99640 499 aa22.16■■□□□ 1.14
VPS28-208ENST00000527797 KRT82Q9NSB4 513 aa22.16■■□□□ 1.14
VPS28-208ENST00000527797 PIK3R2O00459 728 aa22.15■■□□□ 1.14
VPS28-208ENST00000527797 KCNK3O14649 394 aa22.15■■□□□ 1.14
VPS28-208ENST00000527797 ZNF185O15231 689 aa22.15■■□□□ 1.14
VPS28-208ENST00000527797 FGFR3P22607 806 aa22.15■■□□□ 1.14
VPS28-208ENST00000527797 PBX3P40426 434 aa22.15■■□□□ 1.14
VPS28-208ENST00000527797 CLEC20AQ6ZU45 233 aa22.15■■□□□ 1.14
VPS28-208ENST00000527797 FAM183BPQ6ZVS7 135 aa22.15■■□□□ 1.14
VPS28-208ENST00000527797 C16orf59Q7L2K0 433 aa22.15■■□□□ 1.14
VPS28-208ENST00000527797 TMCO2Q7Z6W1 182 aaPredicted RBP22.15■■□□□ 1.14
VPS28-208ENST00000527797 ZDHHC17Q8IUH5 632 aa22.15■■□□□ 1.14
VPS28-208ENST00000527797 UBL4BQ8N7F7 174 aa22.15■■□□□ 1.14
VPS28-208ENST00000527797 GADD45GIP1Q8TAE8 222 aaPredicted RBP22.15■■□□□ 1.14
VPS28-208ENST00000527797 PBKQ96KB5 322 aa22.15■■□□□ 1.14
VPS28-208ENST00000527797 TMEM209Q96SK2 561 aa22.15■■□□□ 1.14
VPS28-208ENST00000527797 METTL5Q9NRN9 209 aaKnown RBP22.15■■□□□ 1.14
VPS28-208ENST00000527797 PCDH10Q9P2E7 1040 aa22.15■■□□□ 1.14
VPS28-208ENST00000527797 CES2O00748 559 aa22.14■■□□□ 1.14
VPS28-208ENST00000527797 DDX3YO15523 660 aaKnown RBP22.14■■□□□ 1.14
VPS28-208ENST00000527797 AP1G2O75843 785 aa22.14■■□□□ 1.14
VPS28-208ENST00000527797 MAN1A1P33908 653 aa22.14■■□□□ 1.14
VPS28-208ENST00000527797 CKAP4Q07065 602 aaKnown RBP22.14■■□□□ 1.14
VPS28-208ENST00000527797 VARS2Q5ST30 1063 aaKnown RBP22.14■■□□□ 1.14
VPS28-208ENST00000527797 SPOUT1Q5T280 376 aaKnown RBP22.14■■□□□ 1.14
VPS28-208ENST00000527797 FAM102AQ5T9C2 384 aaPredicted RBP22.14■■□□□ 1.14
VPS28-208ENST00000527797 ZNF365Q70YC5 407 aa22.14■■□□□ 1.14
VPS28-208ENST00000527797 PIGZQ86VD9 579 aa22.14■■□□□ 1.14
VPS28-208ENST00000527797 LRRTM3Q86VH5 581 aa22.14■■□□□ 1.14
VPS28-208ENST00000527797 CMTR2Q8IYT2 770 aaKnown RBP22.14■■□□□ 1.14
VPS28-208ENST00000527797 DCP1BQ8IZD4 617 aaKnown RBP22.14■■□□□ 1.14
VPS28-208ENST00000527797 SMARCD1Q96GM5 515 aa22.14■■□□□ 1.14
VPS28-208ENST00000527797 RC3H2Q9HBD1 1191 aaKnown RBP22.14■■□□□ 1.14
VPS28-208ENST00000527797 LTBP2Q14767 1821 aa22.14■■□□□ 1.13
VPS28-208ENST00000527797 MYH10P35580 1976 aa22.14■■□□□ 1.13
VPS28-208ENST00000527797 ZBBXA8MT70 800 aa22.13■■□□□ 1.13
VPS28-208ENST00000527797 GABBR2O75899 941 aa22.13■■□□□ 1.13
VPS28-208ENST00000527797 RFC1P35251 1148 aaPredicted RBP22.13■■□□□ 1.13
VPS28-208ENST00000527797 MAP3K7CLP57077 242 aa22.13■■□□□ 1.13
VPS28-208ENST00000527797 SLC6A3Q01959 620 aa22.13■■□□□ 1.13
VPS28-208ENST00000527797 MRPL58Q14197 206 aaKnown RBP22.13■■□□□ 1.13
VPS28-208ENST00000527797 BTG3Q14201 252 aaPredicted RBP22.13■■□□□ 1.13
VPS28-208ENST00000527797 PIGHQ14442 188 aaPredicted RBP22.13■■□□□ 1.13
VPS28-208ENST00000527797 CREG2Q8IUH2 290 aa22.13■■□□□ 1.13
VPS28-208ENST00000527797 SCUBE3Q8IX30 993 aa22.13■■□□□ 1.13
VPS28-208ENST00000527797 JOSD2Q8TAC2 188 aa22.13■■□□□ 1.13
VPS28-208ENST00000527797 KCTD13Q8WZ19 329 aa22.13■■□□□ 1.13
VPS28-208ENST00000527797 ZCWPW1Q9H0M4 648 aa22.13■■□□□ 1.13
VPS28-208ENST00000527797 TMLHEQ9NVH6 421 aa22.13■■□□□ 1.13
VPS28-208ENST00000527797 RNF14Q9UBS8 474 aa22.13■■□□□ 1.13
VPS28-208ENST00000527797 CCDC66A2RUB6 948 aa22.13■■□□□ 1.13
VPS28-208ENST00000527797 PAPSS1O43252 624 aaPredicted RBP22.13■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms