RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 ATICP31939 592 aa10.84□□□□□ -0.67
VPS28-204ENST00000526054 CCR3P51677 355 aa10.84□□□□□ -0.67
VPS28-204ENST00000526054 DLG4P78352 724 aa10.84□□□□□ -0.67
VPS28-204ENST00000526054 ZACNQ401N2 412 aa10.84□□□□□ -0.67
VPS28-204ENST00000526054 STXBP5Q5T5C0 1151 aa10.84□□□□□ -0.67
VPS28-204ENST00000526054 TCERG1LQ5VWI1 586 aa10.84□□□□□ -0.67
VPS28-204ENST00000526054 TDRD10Q5VZ19 366 aaKnown RBP10.84□□□□□ -0.67
VPS28-204ENST00000526054 MFSD6LQ8IWD5 586 aa10.84□□□□□ -0.67
VPS28-204ENST00000526054 ZNF687Q8N1G0 1237 aa10.84□□□□□ -0.67
VPS28-204ENST00000526054 TTC9BQ8N6N2 239 aa10.84□□□□□ -0.67
VPS28-204ENST00000526054 CXorf38Q8TB03 319 aa10.84□□□□□ -0.67
VPS28-204ENST00000526054 ZNF516Q92618 1163 aa10.84□□□□□ -0.67
VPS28-204ENST00000526054 PSMG2Q969U7 264 aa10.84□□□□□ -0.67
VPS28-204ENST00000526054 MSANTD3Q96H12 275 aa10.84□□□□□ -0.67
VPS28-204ENST00000526054 SEPT5Q99719 369 aaPredicted RBP10.84□□□□□ -0.67
VPS28-204ENST00000526054 SRRTQ9BXP5 876 aaKnown RBP10.84□□□□□ -0.67
VPS28-204ENST00000526054 LRRC3Q9BY71 257 aa10.84□□□□□ -0.67
VPS28-204ENST00000526054 MMRN2Q9H8L6 949 aa10.84□□□□□ -0.67
VPS28-204ENST00000526054 TMEM8AQ9HCN3 771 aa10.84□□□□□ -0.67
VPS28-204ENST00000526054 SLC27A5Q9Y2P5 690 aa10.84□□□□□ -0.67
VPS28-204ENST00000526054 KIF26AQ9ULI4 1882 aaPredicted RBP10.83□□□□□ -0.68
VPS28-204ENST00000526054 MED19A0JLT2 244 aaPredicted RBP10.83□□□□□ -0.68
VPS28-204ENST00000526054 SLC38A8A6NNN8 435 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 DPYSL4O14531 572 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 CHADO15335 359 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 SOAT2O75908 522 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 FGF19O95750 216 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 STAU1O95793 577 aaKnown RBP10.83□□□□□ -0.68
VPS28-204ENST00000526054 C4BPAP04003 597 aaKnown RBP10.83□□□□□ -0.68
VPS28-204ENST00000526054 PIK3CAP42336 1068 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 GCLMP48507 274 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 MXI1P50539 228 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 MCCD1P59942 119 aaPredicted RBP10.83□□□□□ -0.68
VPS28-204ENST00000526054 TNNC1P63316 161 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 FCHO2Q0JRZ9 810 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 NCOA4Q13772 614 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 VEPH1Q14D04 833 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 ZNF699Q32M78 642 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 ARHGAP15Q53QZ3 475 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 C1orf220Q5T0J3 134 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 KRT39Q6A163 491 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 C1orf228Q6PIY5 440 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 SV2AQ7L0J3 742 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 ITIH5Q86UX2 942 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 FAM114A1Q8IWE2 563 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 GPR161Q8N6U8 529 aaKnown RBP10.83□□□□□ -0.68
VPS28-204ENST00000526054 ATAD1Q8NBU5 361 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 CCDC150Q8NCX0 1101 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 OR10T2Q8NGX3 314 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 SPATA18Q8TC71 538 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 FAM200AQ8TCP9 573 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 RSPRY1Q96DX4 576 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 GCNAQ96QF7 691 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 TMEM209Q96SK2 561 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 IMPG2Q9BZV3 1241 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 ATXN3LQ9H3M9 355 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 LMAN1LQ9HAT1 526 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 GDAP2Q9NXN4 497 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 HSFX1Q9UBD0 423 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 GMEB2Q9UKD1 530 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 ASB3Q9Y575 518 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 SNX9Q9Y5X1 595 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 OBSL1O75147 1896 aa10.83□□□□□ -0.68
VPS28-204ENST00000526054 HLA-DRAP01903 254 aa10.82□□□□□ -0.68
VPS28-204ENST00000526054 CYP11A1P05108 521 aa10.82□□□□□ -0.68
VPS28-204ENST00000526054 TDGF1P13385 188 aa10.82□□□□□ -0.68
VPS28-204ENST00000526054 P4HA1P13674 534 aa10.82□□□□□ -0.68
VPS28-204ENST00000526054 GABRR2P28476 465 aa10.82□□□□□ -0.68
VPS28-204ENST00000526054 SOX9P48436 509 aa10.82□□□□□ -0.68
VPS28-204ENST00000526054 KPNA1P52294 538 aaPredicted RBP10.82□□□□□ -0.68
VPS28-204ENST00000526054 NRLP54845 237 aa10.82□□□□□ -0.68
VPS28-204ENST00000526054 MARSP56192 900 aaKnown RBP10.82□□□□□ -0.68
VPS28-204ENST00000526054 MYL6P60660 151 aa10.82□□□□□ -0.68
VPS28-204ENST00000526054 LMNB2Q03252 620 aa10.82□□□□□ -0.68
VPS28-204ENST00000526054 TYRO3Q06418 890 aa10.82□□□□□ -0.68
VPS28-204ENST00000526054 PPP3CAQ08209 521 aa10.82□□□□□ -0.68
VPS28-204ENST00000526054 LRRC32Q14392 662 aa10.82□□□□□ -0.68
VPS28-204ENST00000526054 RSPO4Q2I0M5 234 aaPredicted RBP10.82□□□□□ -0.68
VPS28-204ENST00000526054 MGAT5BQ3V5L5 792 aa10.82□□□□□ -0.68
VPS28-204ENST00000526054 SLC39A12Q504Y0 691 aa10.82□□□□□ -0.68
VPS28-204ENST00000526054 ZNF667Q5HYK9 610 aa10.82□□□□□ -0.68
VPS28-204ENST00000526054 GPR158Q5T848 1215 aa10.82□□□□□ -0.68
VPS28-204ENST00000526054 GAREM2Q75VX8 874 aa10.82□□□□□ -0.68
VPS28-204ENST00000526054 DPH6Q7L8W6 267 aa10.82□□□□□ -0.68
VPS28-204ENST00000526054 DNAJB7Q7Z6W7 309 aaPredicted RBP10.82□□□□□ -0.68
VPS28-204ENST00000526054 ARID3BQ8IVW6 561 aaPredicted RBP10.82□□□□□ -0.68
VPS28-204ENST00000526054 THEM5Q8N1Q8 247 aa10.82□□□□□ -0.68
VPS28-204ENST00000526054 TMEM86AQ8N2M4 240 aa10.82□□□□□ -0.68
VPS28-204ENST00000526054 TOP6BLQ8N6T0 577 aa10.82□□□□□ -0.68
VPS28-204ENST00000526054 TAF4BQ92750 862 aa10.82□□□□□ -0.68
VPS28-204ENST00000526054 SLC35C1Q96A29 364 aa10.82□□□□□ -0.68
VPS28-204ENST00000526054 CNOT6LQ96LI5 555 aaKnown RBP10.82□□□□□ -0.68
VPS28-204ENST00000526054 LPIN3Q9BQK8 851 aa10.82□□□□□ -0.68
VPS28-204ENST00000526054 NAT10Q9H0A0 1025 aaKnown RBP10.82□□□□□ -0.68
VPS28-204ENST00000526054 THAP9Q9H5L6 903 aa10.82□□□□□ -0.68
VPS28-204ENST00000526054 C8orf33Q9H7E9 229 aaPredicted RBP10.82□□□□□ -0.68
VPS28-204ENST00000526054 VRTNQ9H8Y1 702 aa10.82□□□□□ -0.68
VPS28-204ENST00000526054 DLL3Q9NYJ7 618 aa10.82□□□□□ -0.68
VPS28-204ENST00000526054 MAGEC2Q9UBF1 373 aaPredicted RBP10.82□□□□□ -0.68
VPS28-204ENST00000526054 RAB23Q9ULC3 237 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms