RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 SKAP2O75563 359 aaPredicted RBP5.46□□□□□ -1.54
CD44-220ENST00000525688 INMTO95050 263 aa5.46□□□□□ -1.54
CD44-220ENST00000525688 CSTBP04080 98 aaKnown RBP5.46□□□□□ -1.54
CD44-220ENST00000525688 RPN1P04843 607 aaKnown RBP5.46□□□□□ -1.54
CD44-220ENST00000525688 TGFB3P10600 412 aa5.46□□□□□ -1.54
CD44-220ENST00000525688 HK1P19367 917 aa5.46□□□□□ -1.54
CD44-220ENST00000525688 IL1R2P27930 398 aa5.46□□□□□ -1.54
CD44-220ENST00000525688 PDIA3P30101 505 aaKnown RBP5.46□□□□□ -1.54
CD44-220ENST00000525688 TOB1P50616 345 aaPredicted RBP5.46□□□□□ -1.54
CD44-220ENST00000525688 DDX10Q13206 875 aaKnown RBP5.46□□□□□ -1.54
CD44-220ENST00000525688 CCDC38Q502W7 563 aa5.46□□□□□ -1.54
CD44-220ENST00000525688 FAM133BQ5BKY9 247 aaKnown RBP5.46□□□□□ -1.54
CD44-220ENST00000525688 MZT2AQ6P582 158 aa5.46□□□□□ -1.54
CD44-220ENST00000525688 CFAP161Q6P656 301 aa5.46□□□□□ -1.54
CD44-220ENST00000525688 LVRNQ6Q4G3 990 aa5.46□□□□□ -1.54
CD44-220ENST00000525688 SPOCD1Q6ZMY3 1216 aa5.46□□□□□ -1.54
CD44-220ENST00000525688 SIAH1Q8IUQ4 282 aa5.46□□□□□ -1.54
CD44-220ENST00000525688 GSPT2Q8IYD1 628 aaKnown RBP5.46□□□□□ -1.54
CD44-220ENST00000525688 POC1BQ8TC44 478 aa5.46□□□□□ -1.54
CD44-220ENST00000525688 CCT6BQ92526 530 aa5.46□□□□□ -1.54
CD44-220ENST00000525688 MARS2Q96GW9 593 aaKnown RBP5.46□□□□□ -1.54
CD44-220ENST00000525688 PNKPQ96T60 521 aa5.46□□□□□ -1.54
CD44-220ENST00000525688 NEU1Q99519 415 aa5.46□□□□□ -1.54
CD44-220ENST00000525688 XYLT2Q9H1B5 865 aa5.46□□□□□ -1.54
CD44-220ENST00000525688 NECTIN3Q9NQS3 549 aa5.46□□□□□ -1.54
CD44-220ENST00000525688 MRPS18AQ9NVS2 196 aaKnown RBP5.46□□□□□ -1.54
CD44-220ENST00000525688 ITGB1BP2Q9UKP3 347 aa5.46□□□□□ -1.54
CD44-220ENST00000525688 MAGED2Q9UNF1 606 aaPredicted RBP5.46□□□□□ -1.54
CD44-220ENST00000525688 AKNAQ7Z591 1439 aa5.46□□□□□ -1.54
CD44-220ENST00000525688 ZNF536O15090 1300 aa5.46□□□□□ -1.54
CD44-220ENST00000525688 ADAMTS20P59510 1910 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 LOC102723971A0A1B0GUV8 181 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 PATE3B3GLJ2 98 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 DIRC3C9JPN6 131 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 E7ENX8 843 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 hCG_1984214I3L0E3 225 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 POLRMTO00411 1230 aaKnown RBP5.45□□□□□ -1.54
CD44-220ENST00000525688 RASSF9O75901 435 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 SCP2P22307 547 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 ACVR2AP27037 513 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 GABRB3P28472 473 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 COPAP53621 1224 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 EIF5P55010 431 aaKnown RBP5.45□□□□□ -1.54
CD44-220ENST00000525688 NHLH2Q02577 135 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 HHEXQ03014 270 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 TAP2Q03519 686 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 FOXO1Q12778 655 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 BIRC3Q13489 604 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 IQCB1Q15051 598 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 ELF2Q15723 593 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 ZACNQ401N2 412 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 CCDC92Q53HC0 331 aaPredicted RBP5.45□□□□□ -1.54
CD44-220ENST00000525688 JAKMIP3Q5VZ66 844 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 USP17L6PQ6QN14 398 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 ZDHHC24Q6UX98 284 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 MAMDC4Q6UXC1 1216 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 Q6ZSN1 163 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 CIR1Q86X95 450 aaPredicted RBP5.45□□□□□ -1.54
CD44-220ENST00000525688 KRT73Q86Y46 540 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 MB21D1Q8N884 522 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 FEZF2Q8TBJ5 459 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 RSPH1Q8WYR4 309 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 MED15Q96RN5 788 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 TRIB1Q96RU8 372 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 PPP1R9BQ96SB3 815 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 MNTQ99583 582 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 SMOQ99835 787 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 HEPHQ9BQS7 1158 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 MAGEB5Q9BZ81 275 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.45□□□□□ -1.54
CD44-220ENST00000525688 TMEM8AQ9HCN3 771 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 VSX1Q9NZR4 365 aaPredicted RBP5.45□□□□□ -1.54
CD44-220ENST00000525688 MID2Q9UJV3 735 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 SLC39A10Q9ULF5 831 aa5.45□□□□□ -1.54
CD44-220ENST00000525688 MTUS2Q5JR59 1369 aa5.44□□□□□ -1.54
CD44-220ENST00000525688 MAP3K1Q13233 1512 aa5.44□□□□□ -1.54
CD44-220ENST00000525688 A0A087WZ62 844 aa5.44□□□□□ -1.54
CD44-220ENST00000525688 GOLGA6L6A8MZA4 724 aa5.44□□□□□ -1.54
CD44-220ENST00000525688 LEFTY2O00292 366 aa5.44□□□□□ -1.54
CD44-220ENST00000525688 DCLK1O15075 740 aa5.44□□□□□ -1.54
CD44-220ENST00000525688 NPC1O15118 1278 aa5.44□□□□□ -1.54
CD44-220ENST00000525688 CYP27B1O15528 508 aa5.44□□□□□ -1.54
CD44-220ENST00000525688 SOAT2O75908 522 aa5.44□□□□□ -1.54
CD44-220ENST00000525688 RHOBTB3O94955 611 aa5.44□□□□□ -1.54
CD44-220ENST00000525688 ATXN1LP0C7T5 689 aaKnown RBP5.44□□□□□ -1.54
CD44-220ENST00000525688 TXKP42681 527 aa5.44□□□□□ -1.54
CD44-220ENST00000525688 ZNF844Q08AG5 666 aa5.44□□□□□ -1.54
CD44-220ENST00000525688 GALNT1Q10472 559 aaPredicted RBP5.44□□□□□ -1.54
CD44-220ENST00000525688 BOP1Q14137 746 aaKnown RBP5.44□□□□□ -1.54
CD44-220ENST00000525688 ARHGEF7Q14155 803 aa5.44□□□□□ -1.54
CD44-220ENST00000525688 SLC29A2Q14542 456 aa5.44□□□□□ -1.54
CD44-220ENST00000525688 NPY5RQ15761 445 aa5.44□□□□□ -1.54
CD44-220ENST00000525688 PFKFB4Q16877 469 aa5.44□□□□□ -1.54
CD44-220ENST00000525688 INSCQ1MX18 579 aa5.44□□□□□ -1.54
CD44-220ENST00000525688 FRMPD1Q5SYB0 1578 aa5.44□□□□□ -1.54
CD44-220ENST00000525688 FCRL6Q6DN72 434 aa5.44□□□□□ -1.54
CD44-220ENST00000525688 TAPT1Q6NXT6 567 aa5.44□□□□□ -1.54
CD44-220ENST00000525688 C16orf54Q6UWD8 224 aa5.44□□□□□ -1.54
CD44-220ENST00000525688 LDHAL6AQ6ZMR3 332 aa5.44□□□□□ -1.54
CD44-220ENST00000525688 TMPRSS9Q7Z410 1059 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms