RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 MAN2B1O00754 1011 aa9.97□□□□□ -0.81
HDAC3-215ENST00000519474 DPYSL4O14531 572 aa9.97□□□□□ -0.81
HDAC3-215ENST00000519474 GADD45BO75293 160 aaPredicted RBP9.97□□□□□ -0.81
HDAC3-215ENST00000519474 TADA3O75528 432 aa9.97□□□□□ -0.81
HDAC3-215ENST00000519474 PRAMEF12O95522 483 aa9.97□□□□□ -0.81
HDAC3-215ENST00000519474 RFX1P22670 979 aa9.97□□□□□ -0.81
HDAC3-215ENST00000519474 NR2F2P24468 414 aa9.97□□□□□ -0.81
HDAC3-215ENST00000519474 PSMC2P35998 433 aaKnown RBP9.97□□□□□ -0.81
HDAC3-215ENST00000519474 GRIK1P39086 918 aa9.97□□□□□ -0.81
HDAC3-215ENST00000519474 NBL1P41271 181 aa9.97□□□□□ -0.81
HDAC3-215ENST00000519474 MLLT6P55198 1093 aaPredicted RBP9.97□□□□□ -0.81
HDAC3-215ENST00000519474 USP46P62068 366 aa9.97□□□□□ -0.81
HDAC3-215ENST00000519474 TNNC1P63316 161 aa9.97□□□□□ -0.81
HDAC3-215ENST00000519474 CYP27A1Q02318 531 aa9.97□□□□□ -0.81
HDAC3-215ENST00000519474 PPP3CAQ08209 521 aa9.97□□□□□ -0.81
HDAC3-215ENST00000519474 BIRC3Q13489 604 aa9.97□□□□□ -0.81
HDAC3-215ENST00000519474 UBXN2BQ14CS0 331 aa9.97□□□□□ -0.81
HDAC3-215ENST00000519474 MAPRE1Q15691 268 aaKnown RBP9.97□□□□□ -0.81
HDAC3-215ENST00000519474 ZNF667Q5HYK9 610 aa9.97□□□□□ -0.81
HDAC3-215ENST00000519474 MDH1BQ5I0G3 518 aa9.97□□□□□ -0.81
HDAC3-215ENST00000519474 C4orf50Q6ZRC1 276 aa9.97□□□□□ -0.81
HDAC3-215ENST00000519474 C1orf210Q8IVY1 113 aa9.97□□□□□ -0.81
HDAC3-215ENST00000519474 ELOA2Q8IYF1 753 aaPredicted RBP9.97□□□□□ -0.81
HDAC3-215ENST00000519474 CRYBG2Q8N1P7 616 aa9.97□□□□□ -0.81
HDAC3-215ENST00000519474 CELF5Q8N6W0 485 aaKnown RBP9.97□□□□□ -0.81
HDAC3-215ENST00000519474 USP13Q92995 863 aaPredicted RBP9.97□□□□□ -0.81
HDAC3-215ENST00000519474 MYLPFQ96A32 169 aa9.97□□□□□ -0.81
HDAC3-215ENST00000519474 EEF2KMTQ96G04 330 aa9.97□□□□□ -0.81
HDAC3-215ENST00000519474 TRMT2BQ96GJ1 504 aaKnown RBP9.97□□□□□ -0.81
HDAC3-215ENST00000519474 ZFYVE19Q96K21 471 aa9.97□□□□□ -0.81
HDAC3-215ENST00000519474 C8orf48Q96LL4 319 aa9.97□□□□□ -0.81
HDAC3-215ENST00000519474 GSDMAQ96QA5 445 aa9.97□□□□□ -0.81
HDAC3-215ENST00000519474 SMG9Q9H0W8 520 aaKnown RBP9.97□□□□□ -0.81
HDAC3-215ENST00000519474 PRDM16Q9HAZ2 1276 aa9.97□□□□□ -0.81
HDAC3-215ENST00000519474 TMEM30AQ9NV96 361 aa9.97□□□□□ -0.81
HDAC3-215ENST00000519474 GCNT4Q9P109 453 aa9.97□□□□□ -0.81
HDAC3-215ENST00000519474 MUC6Q6W4X9 2439 aa9.96□□□□□ -0.81
HDAC3-215ENST00000519474 ASS1P00966 412 aaKnown RBP9.96□□□□□ -0.82
HDAC3-215ENST00000519474 HLA-DRAP01903 254 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 CCNE1P24864 410 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 RPL13P26373 211 aaKnown RBP9.96□□□□□ -0.82
HDAC3-215ENST00000519474 RAP1GAPP47736 663 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 GCLMP48507 274 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 PMS1P54277 932 aaKnown RBP9.96□□□□□ -0.82
HDAC3-215ENST00000519474 CACNA2D1P54289 1103 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 FAM193AP78312 1265 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 FAM160A1Q05DH4 1040 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 ENPEPQ07075 957 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 EDRF1Q3B7T1 1238 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 ARHGAP29Q52LW3 1261 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 COBLL1Q53SF7 1204 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 ZNF658Q5TYW1 1059 aaPredicted RBP9.96□□□□□ -0.82
HDAC3-215ENST00000519474 ANKRD40Q6AI12 368 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 ISM2Q6H9L7 571 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 SPOPLQ6IQ16 392 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 YAF2Q8IY57 180 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 FAM186BQ8IYM0 893 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 B3GALNT2Q8NCR0 500 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 TTC8Q8TAM2 541 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 RIN3Q8TB24 985 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 BPIFB1Q8TDL5 484 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 FAM3CQ92520 227 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 MRPS31Q92665 395 aaKnown RBP9.96□□□□□ -0.82
HDAC3-215ENST00000519474 TAF4BQ92750 862 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 CEP295NLQ96MC4 621 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 SLC22A12Q96S37 553 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 KCNK16Q96T55 309 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 FAM83CQ9BQN1 747 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 SMYD3Q9H7B4 428 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 LMAN1LQ9HAT1 526 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 TDP1Q9NUW8 608 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 GTSE1Q9NYZ3 720 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 UXTQ9UBK9 157 aaPredicted RBP9.96□□□□□ -0.82
HDAC3-215ENST00000519474 ZMYM5Q9UJ78 669 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 CCL26Q9Y258 94 aa9.96□□□□□ -0.82
HDAC3-215ENST00000519474 OTOL1A6NHN0 477 aaPredicted RBP9.95□□□□□ -0.82
HDAC3-215ENST00000519474 F8VP50 259 aa9.95□□□□□ -0.82
HDAC3-215ENST00000519474 NCAM2O15394 837 aa9.95□□□□□ -0.82
HDAC3-215ENST00000519474 SP9P0CG40 484 aa9.95□□□□□ -0.82
HDAC3-215ENST00000519474 TRIM49P0CI25 452 aa9.95□□□□□ -0.82
HDAC3-215ENST00000519474 TRIM49CP0CI26 452 aa9.95□□□□□ -0.82
HDAC3-215ENST00000519474 CHRNB1P11230 501 aa9.95□□□□□ -0.82
HDAC3-215ENST00000519474 DDX6P26196 483 aaKnown RBP eCLIP9.95□□□□□ -0.82
HDAC3-215ENST00000519474 RPS9P46781 194 aaKnown RBP9.95□□□□□ -0.82
HDAC3-215ENST00000519474 SOX9P48436 509 aa9.95□□□□□ -0.82
HDAC3-215ENST00000519474 ZXDBP98169 803 aa9.95□□□□□ -0.82
HDAC3-215ENST00000519474 TNK2Q07912 1038 aa9.95□□□□□ -0.82
HDAC3-215ENST00000519474 ZNF699Q32M78 642 aa9.95□□□□□ -0.82
HDAC3-215ENST00000519474 WDR44Q5JSH3 913 aa9.95□□□□□ -0.82
HDAC3-215ENST00000519474 MAMSTRQ6ZN01 415 aa9.95□□□□□ -0.82
HDAC3-215ENST00000519474 INTS8Q75QN2 995 aaKnown RBP9.95□□□□□ -0.82
HDAC3-215ENST00000519474 ACOT1Q86TX2 421 aa9.95□□□□□ -0.82
HDAC3-215ENST00000519474 ADSSL1Q8N142 457 aa9.95□□□□□ -0.82
HDAC3-215ENST00000519474 ARL14EPQ8N8R7 260 aaPredicted RBP9.95□□□□□ -0.82
HDAC3-215ENST00000519474 CSGALNACT1Q8TDX6 532 aa9.95□□□□□ -0.82
HDAC3-215ENST00000519474 TAS1R2Q8TE23 839 aa9.95□□□□□ -0.82
HDAC3-215ENST00000519474 SEMA4DQ92854 862 aa9.95□□□□□ -0.82
HDAC3-215ENST00000519474 CCDC34Q96HJ3 373 aa9.95□□□□□ -0.82
HDAC3-215ENST00000519474 GCNAQ96QF7 691 aa9.95□□□□□ -0.82
HDAC3-215ENST00000519474 TTLL2Q9BWV7 592 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms