RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 SPTLC3Q9NUV7 552 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 IRAK4Q9NWZ3 460 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 PLA2G3Q9NZ20 509 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 CPSF2Q9P2I0 782 aaKnown RBP6.11□□□□□ -1.43
NUP54-218ENST00000515460 ABCA12Q86UK0 2595 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 DOPEY1Q5JWR5 2465 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 PTPDC1A2A3K4 754 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 ERICH4A6NGS2 130 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 IPO5O00410 1097 aaKnown RBP6.1□□□□□ -1.43
NUP54-218ENST00000515460 KIF5CO60282 957 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 CAND2O75155 1236 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 CYP17A1P05093 508 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 IVLP07476 585 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 CETPP11597 493 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 MCM7P33993 719 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 STAT5BP51692 787 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 SESN2P58004 480 aaPredicted RBP6.1□□□□□ -1.43
NUP54-218ENST00000515460 TCEA2Q15560 299 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 ZRSR1Q15695 479 aaKnown RBP6.1□□□□□ -1.43
NUP54-218ENST00000515460 SLC5A9Q2M3M2 681 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 CAVIN4Q5BKX8 364 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 METTL24Q5JXM2 366 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 FKBP1CQ5VVH2 108 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 MIGA2Q7L4E1 593 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 RTN4RL1Q86UN2 441 aaPredicted RBP6.1□□□□□ -1.43
NUP54-218ENST00000515460 FAM83AQ86UY5 434 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 SGMS1Q86VZ5 419 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 ERO1BQ86YB8 467 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 HOMER1Q86YM7 354 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 GPR135Q8IZ08 494 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 DRAXINQ8NBI3 349 aaPredicted RBP6.1□□□□□ -1.43
NUP54-218ENST00000515460 KIF18AQ8NI77 898 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 CCDC26Q8TAB7 109 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 BADQ92934 168 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 TEKT1Q969V4 418 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 RNPC3Q96LT9 517 aaKnown RBP6.1□□□□□ -1.43
NUP54-218ENST00000515460 C22orf23Q9BZE7 217 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 FAM107BQ9H098 131 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 USP44Q9H0E7 712 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 SPATS2LQ9NUQ6 558 aaKnown RBP6.1□□□□□ -1.43
NUP54-218ENST00000515460 ZKSCAN7Q9P0L1 754 aaPredicted RBP6.1□□□□□ -1.43
NUP54-218ENST00000515460 CPA4Q9UI42 421 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 ZNF112Q9UJU3 913 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 VWA7Q9Y334 891 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 BRWD1Q9NSI6 2320 aa6.1□□□□□ -1.43
NUP54-218ENST00000515460 LTBP2Q14767 1821 aa6.09□□□□□ -1.43
NUP54-218ENST00000515460 PSME4Q14997 1843 aa6.09□□□□□ -1.43
NUP54-218ENST00000515460 ADGRA2Q96PE1 1338 aa6.09□□□□□ -1.43
NUP54-218ENST00000515460 UBA6A0AVT1 1052 aaPredicted RBP6.09□□□□□ -1.43
NUP54-218ENST00000515460 GRXCR1A8MXD5 290 aa6.09□□□□□ -1.43
NUP54-218ENST00000515460 DCXO43602 365 aa6.09□□□□□ -1.43
NUP54-218ENST00000515460 JMJD7P0C870 316 aa6.09□□□□□ -1.43
NUP54-218ENST00000515460 COPB2P35606 906 aa6.09□□□□□ -1.43
NUP54-218ENST00000515460 RFX5P48382 616 aaPredicted RBP6.09□□□□□ -1.43
NUP54-218ENST00000515460 RHBDL3P58872 404 aa6.09□□□□□ -1.43
NUP54-218ENST00000515460 TPM4P67936 248 aa6.09□□□□□ -1.43
NUP54-218ENST00000515460 HHEXQ03014 270 aa6.09□□□□□ -1.43
NUP54-218ENST00000515460 PPATQ06203 517 aa6.09□□□□□ -1.43
NUP54-218ENST00000515460 PABPC4Q13310 644 aaKnown RBP eCLIP6.09□□□□□ -1.43
NUP54-218ENST00000515460 PPIL2Q13356 520 aa6.09□□□□□ -1.43
NUP54-218ENST00000515460 SNAPC2Q13487 334 aa6.09□□□□□ -1.43
NUP54-218ENST00000515460 PDIA5Q14554 519 aa6.09□□□□□ -1.43
NUP54-218ENST00000515460 ZNF460Q14592 562 aa6.09□□□□□ -1.43
NUP54-218ENST00000515460 GRM7Q14831 915 aa6.09□□□□□ -1.43
NUP54-218ENST00000515460 CAVIN1Q6NZI2 390 aaKnown RBP6.09□□□□□ -1.43
NUP54-218ENST00000515460 ATG9AQ7Z3C6 839 aa6.09□□□□□ -1.43
NUP54-218ENST00000515460 CCDC186Q7Z3E2 898 aa6.09□□□□□ -1.43
NUP54-218ENST00000515460 TEX11Q8IYF3 940 aa6.09□□□□□ -1.43
NUP54-218ENST00000515460 C10orf67Q8IYJ2 551 aa6.09□□□□□ -1.43
NUP54-218ENST00000515460 ZNF397Q8NF99 534 aaPredicted RBP6.09□□□□□ -1.43
NUP54-218ENST00000515460 GOLGA5Q8TBA6 731 aa6.09□□□□□ -1.43
NUP54-218ENST00000515460 FAM151AQ8WW52 585 aa6.09□□□□□ -1.43
NUP54-218ENST00000515460 NEU4Q8WWR8 484 aaPredicted RBP6.09□□□□□ -1.43
NUP54-218ENST00000515460 LPPQ93052 612 aa6.09□□□□□ -1.43
NUP54-218ENST00000515460 FOXRED1Q96CU9 486 aaPredicted RBP6.09□□□□□ -1.43
NUP54-218ENST00000515460 KIF1BPQ96EK5 621 aa6.09□□□□□ -1.43
NUP54-218ENST00000515460 CHFRQ96EP1 664 aa6.09□□□□□ -1.43
NUP54-218ENST00000515460 CRACR2AQ9BSW2 395 aa6.09□□□□□ -1.43
NUP54-218ENST00000515460 TRIM8Q9BZR9 551 aa6.09□□□□□ -1.43
NUP54-218ENST00000515460 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.09□□□□□ -1.43
NUP54-218ENST00000515460 RMI1Q9H9A7 625 aa6.09□□□□□ -1.43
NUP54-218ENST00000515460 ZCCHC17Q9NP64 241 aaKnown RBP6.09□□□□□ -1.43
NUP54-218ENST00000515460 INTS7Q9NVH2 962 aaKnown RBP6.09□□□□□ -1.43
NUP54-218ENST00000515460 B4GALT6Q9UBX8 382 aa6.09□□□□□ -1.43
NUP54-218ENST00000515460 TECTAO75443 2155 aa6.08□□□□□ -1.44
NUP54-218ENST00000515460 ZNF521Q96K83 1311 aa6.08□□□□□ -1.44
NUP54-218ENST00000515460 PDHXO00330 501 aa6.08□□□□□ -1.44
NUP54-218ENST00000515460 MARCH6O60337 910 aa6.08□□□□□ -1.44
NUP54-218ENST00000515460 H2AFYO75367 372 aaKnown RBP6.08□□□□□ -1.44
NUP54-218ENST00000515460 PRLP01236 227 aa6.08□□□□□ -1.44
NUP54-218ENST00000515460 PAX3P23760 479 aa6.08□□□□□ -1.44
NUP54-218ENST00000515460 ACRV1P26436 265 aa6.08□□□□□ -1.44
NUP54-218ENST00000515460 HOXD10P28358 340 aa6.08□□□□□ -1.44
NUP54-218ENST00000515460 SLC6A3Q01959 620 aa6.08□□□□□ -1.44
NUP54-218ENST00000515460 IFT88Q13099 833 aa6.08□□□□□ -1.44
NUP54-218ENST00000515460 TTC38Q5R3I4 469 aa6.08□□□□□ -1.44
NUP54-218ENST00000515460 CDCA2Q69YH5 1023 aaPredicted RBP6.08□□□□□ -1.44
NUP54-218ENST00000515460 CDC42EP5Q6NZY7 148 aa6.08□□□□□ -1.44
NUP54-218ENST00000515460 KLHDC10Q6PID8 442 aa6.08□□□□□ -1.44
NUP54-218ENST00000515460 KIAA1958Q8N8K9 716 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms