RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 SGSM3Q96HU1 749 aa15.6■□□□□ 0.09
NUP54-217ENST00000514987 C9orf72Q96LT7 481 aa15.6■□□□□ 0.09
NUP54-217ENST00000514987 C16orf70Q9BSU1 422 aa15.6■□□□□ 0.09
NUP54-217ENST00000514987 ZWILCHQ9H900 591 aa15.6■□□□□ 0.09
NUP54-217ENST00000514987 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.6■□□□□ 0.09
NUP54-217ENST00000514987 DPP3Q9NY33 737 aa15.6■□□□□ 0.09
NUP54-217ENST00000514987 EURLQ9NYK6 297 aa15.6■□□□□ 0.09
NUP54-217ENST00000514987 SLC24A2Q9UI40 661 aa15.6■□□□□ 0.09
NUP54-217ENST00000514987 PLXNB2O15031 1838 aa15.6■□□□□ 0.09
NUP54-217ENST00000514987 EXOC1LA0A1B0GW35 172 aa15.59■□□□□ 0.09
NUP54-217ENST00000514987 RRN3P2A6NIE6 340 aa15.59■□□□□ 0.09
NUP54-217ENST00000514987 CCT8L1PA6NM43 557 aa15.59■□□□□ 0.09
NUP54-217ENST00000514987 H3BRB1 525 aa15.59■□□□□ 0.09
NUP54-217ENST00000514987 TSPAN1O60635 241 aa15.59■□□□□ 0.09
NUP54-217ENST00000514987 TRUB2O95900 331 aaKnown RBP15.59■□□□□ 0.09
NUP54-217ENST00000514987 GSTA1P08263 222 aa15.59■□□□□ 0.09
NUP54-217ENST00000514987 SETSIPP0DME0 302 aa15.59■□□□□ 0.09
NUP54-217ENST00000514987 HOXD8P13378 290 aaPredicted RBP15.59■□□□□ 0.09
NUP54-217ENST00000514987 PECAM1P16284 738 aaPredicted RBP15.59■□□□□ 0.09
NUP54-217ENST00000514987 PHBP35232 272 aa15.59■□□□□ 0.09
NUP54-217ENST00000514987 ZNF143P52747 638 aaPredicted RBP15.59■□□□□ 0.09
NUP54-217ENST00000514987 OTUD4Q01804 1114 aaKnown RBP15.59■□□□□ 0.09
NUP54-217ENST00000514987 TFDP2Q14188 446 aa15.59■□□□□ 0.09
NUP54-217ENST00000514987 ANKRD20A8PQ5CZ79 823 aa15.59■□□□□ 0.09
NUP54-217ENST00000514987 FAM47CQ5HY64 1035 aa15.59■□□□□ 0.09
NUP54-217ENST00000514987 MAMDC4Q6UXC1 1216 aa15.59■□□□□ 0.09
NUP54-217ENST00000514987 PACS2Q86VP3 889 aa15.59■□□□□ 0.09
NUP54-217ENST00000514987 ARFGAP1Q8N6T3 406 aa15.59■□□□□ 0.09
NUP54-217ENST00000514987 ACTL9Q8TC94 416 aa15.59■□□□□ 0.09
NUP54-217ENST00000514987 RSAD2Q8WXG1 361 aa15.59■□□□□ 0.09
NUP54-217ENST00000514987 CCT6BQ92526 530 aa15.59■□□□□ 0.09
NUP54-217ENST00000514987 NT5C1AQ9BXI3 368 aa15.59■□□□□ 0.09
NUP54-217ENST00000514987 DNAI2Q9GZS0 605 aa15.59■□□□□ 0.09
NUP54-217ENST00000514987 TUT1Q9H6E5 874 aaKnown RBP15.59■□□□□ 0.09
NUP54-217ENST00000514987 MORF4L1Q9UBU8 362 aa15.59■□□□□ 0.09
NUP54-217ENST00000514987 APOC4-APOC2K7ER74 178 aa15.58■□□□□ 0.09
NUP54-217ENST00000514987 CAPN15O75808 1086 aa15.58■□□□□ 0.09
NUP54-217ENST00000514987 APOC2P02655 101 aa15.58■□□□□ 0.09
NUP54-217ENST00000514987 ZSCAN5DPP0CG00 497 aa15.58■□□□□ 0.09
NUP54-217ENST00000514987 GPD1P21695 349 aa15.58■□□□□ 0.09
NUP54-217ENST00000514987 IFNAR2P48551 515 aa15.58■□□□□ 0.09
NUP54-217ENST00000514987 ARL4CP56559 192 aa15.58■□□□□ 0.09
NUP54-217ENST00000514987 TMEM63BQ5T3F8 832 aa15.58■□□□□ 0.09
NUP54-217ENST00000514987 CYP4F22Q6NT55 531 aa15.58■□□□□ 0.09
NUP54-217ENST00000514987 MAML1Q92585 1016 aa15.58■□□□□ 0.09
NUP54-217ENST00000514987 PRCCQ92733 491 aaPredicted RBP15.58■□□□□ 0.09
NUP54-217ENST00000514987 GRAMD1AQ96CP6 724 aa15.58■□□□□ 0.09
NUP54-217ENST00000514987 CPB2Q96IY4 423 aa15.58■□□□□ 0.09
NUP54-217ENST00000514987 PWWP2AQ96N64 755 aa15.58■□□□□ 0.09
NUP54-217ENST00000514987 TWNKQ96RR1 684 aa15.58■□□□□ 0.09
NUP54-217ENST00000514987 TMEM121Q9BTD3 319 aa15.58■□□□□ 0.09
NUP54-217ENST00000514987 FARP1Q9Y4F1 1045 aaPredicted RBP15.58■□□□□ 0.09
NUP54-217ENST00000514987 MCF2LO15068 1137 aa15.58■□□□□ 0.08
NUP54-217ENST00000514987 IFNB1P01574 187 aa15.58■□□□□ 0.08
NUP54-217ENST00000514987 VTNP04004 478 aa15.58■□□□□ 0.08
NUP54-217ENST00000514987 IL1R2P27930 398 aa15.58■□□□□ 0.08
NUP54-217ENST00000514987 MIPP30301 263 aa15.58■□□□□ 0.08
NUP54-217ENST00000514987 STIP1P31948 543 aaKnown RBP15.58■□□□□ 0.08
NUP54-217ENST00000514987 STX2P32856 288 aa15.58■□□□□ 0.08
NUP54-217ENST00000514987 GJA5P36382 358 aa15.58■□□□□ 0.08
NUP54-217ENST00000514987 NDST1P52848 882 aa15.58■□□□□ 0.08
NUP54-217ENST00000514987 IL9RQ01113 521 aa15.58■□□□□ 0.08
NUP54-217ENST00000514987 PPARDQ03181 441 aa15.58■□□□□ 0.08
NUP54-217ENST00000514987 GRIK4Q16099 956 aa15.58■□□□□ 0.08
NUP54-217ENST00000514987 HIF1AQ16665 826 aa15.58■□□□□ 0.08
NUP54-217ENST00000514987 FAM102AQ5T9C2 384 aaPredicted RBP15.58■□□□□ 0.08
NUP54-217ENST00000514987 VSIG1Q86XK7 387 aa15.58■□□□□ 0.08
NUP54-217ENST00000514987 RFX6Q8HWS3 928 aa15.58■□□□□ 0.08
NUP54-217ENST00000514987 MAP7D3Q8IWC1 876 aa15.58■□□□□ 0.08
NUP54-217ENST00000514987 GLIS1Q8NBF1 620 aa15.58■□□□□ 0.08
NUP54-217ENST00000514987 ZBTB10Q96DT7 871 aa15.58■□□□□ 0.08
NUP54-217ENST00000514987 MAGEB18Q96M61 343 aa15.58■□□□□ 0.08
NUP54-217ENST00000514987 ELAC2Q9BQ52 826 aaKnown RBP15.58■□□□□ 0.08
NUP54-217ENST00000514987 MAK16Q9BXY0 300 aaKnown RBP15.58■□□□□ 0.08
NUP54-217ENST00000514987 OSBPL7Q9BZF2 842 aa15.58■□□□□ 0.08
NUP54-217ENST00000514987 KATNBL1Q9H079 304 aa15.58■□□□□ 0.08
NUP54-217ENST00000514987 USP18Q9UMW8 372 aa15.58■□□□□ 0.08
NUP54-217ENST00000514987 SMG5Q9UPR3 1016 aaKnown RBP15.58■□□□□ 0.08
NUP54-217ENST00000514987 FAM47DPA6NHR8 397 aa15.57■□□□□ 0.08
NUP54-217ENST00000514987 RASA4BC9J798 803 aa15.57■□□□□ 0.08
NUP54-217ENST00000514987 PDHXO00330 501 aa15.57■□□□□ 0.08
NUP54-217ENST00000514987 DPYSL4O14531 572 aa15.57■□□□□ 0.08
NUP54-217ENST00000514987 RASA4O43374 803 aa15.57■□□□□ 0.08
NUP54-217ENST00000514987 SUN1O94901 812 aa15.57■□□□□ 0.08
NUP54-217ENST00000514987 CYP2C8P10632 490 aa15.57■□□□□ 0.08
NUP54-217ENST00000514987 GTF2A2P52657 109 aa15.57■□□□□ 0.08
NUP54-217ENST00000514987 PDK2Q15119 407 aa15.57■□□□□ 0.08
NUP54-217ENST00000514987 DGKDQ16760 1214 aa15.57■□□□□ 0.08
NUP54-217ENST00000514987 IQSEC1Q6DN90 963 aa15.57■□□□□ 0.08
NUP54-217ENST00000514987 ZDHHC17Q8IUH5 632 aa15.57■□□□□ 0.08
NUP54-217ENST00000514987 SRRM1Q8IYB3 904 aaKnown RBP15.57■□□□□ 0.08
NUP54-217ENST00000514987 KIAA0319LQ8IZA0 1049 aa15.57■□□□□ 0.08
NUP54-217ENST00000514987 ATP11CQ8NB49 1132 aa15.57■□□□□ 0.08
NUP54-217ENST00000514987 USP6NLQ92738 828 aa15.57■□□□□ 0.08
NUP54-217ENST00000514987 ACSF2Q96CM8 615 aaPredicted RBP15.57■□□□□ 0.08
NUP54-217ENST00000514987 HAUS1Q96CS2 278 aa15.57■□□□□ 0.08
NUP54-217ENST00000514987 KIF12Q96FN5 646 aa15.57■□□□□ 0.08
NUP54-217ENST00000514987 TSPAN18Q96SJ8 248 aa15.57■□□□□ 0.08
NUP54-217ENST00000514987 CTNNAL1Q9UBT7 734 aa15.57■□□□□ 0.08
NUP54-217ENST00000514987 HMGXB4Q9UGU5 601 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms