RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 FMR1NBQ8N0W7 255 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 APPL2Q8NEU8 664 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 RSPH1Q8WYR4 309 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 DDX27Q96GQ7 796 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 ZNF512Q96ME7 567 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 TMEM134Q9H6X4 195 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 SMYD3Q9H7B4 428 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 MAN1B1Q9UKM7 699 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 TTC26A0AVF1 554 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 WDR27A2RRH5 827 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 FGFR1OPO95684 399 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 ALDH1A3P47895 512 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 RAPGEF1Q13905 1077 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 C9orf57Q5W0N0 161 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 SYCE2Q6PIF2 218 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 DCLRE1AQ6PJP8 1040 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 ZPBP2Q6X784 338 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 FILIP1Q7Z7B0 1213 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 IQCF2Q8IXL9 164 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 MAB21L3Q8N8X9 362 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 VPS16Q9H269 839 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 DPEP3Q9H4B8 488 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 ELAC1Q9H777 363 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 C17orf75Q9HAS0 396 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 CLEC1BQ9P126 229 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 MYBPHLA2RUH7 354 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 LDHAP00338 332 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 SRGAP2BP0DMP2 458 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 ZNF445P59923 1031 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 MCL1Q07820 350 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 MYO1EQ12965 1108 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 DPCR1Q3MIW9 517 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 HYIQ5T013 277 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 CRELD2Q6UXH1 353 aaPredicted RBP8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 TAS1R2Q8TE23 839 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 CACTINQ8WUQ7 758 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 TBC1D31Q96DN5 1066 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 CABS1Q96KC9 395 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 SLC7A5P2Q9GIP4 190 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 FAM86C1Q9NVL1 165 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 CPSF3Q9UKF6 684 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 GOLGA4Q13439 2230 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 DPYSL4O14531 572 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 EXTL3O43909 919 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 CEP104O60308 925 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 URI1O94763 535 aaPredicted RBP8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 CKMP06732 381 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 EPB41P11171 864 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 CCT5P48643 541 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 POLE2P56282 527 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 NCOA4Q13772 614 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 FAAH2Q6GMR7 532 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 GJB7Q6PEY0 223 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 SLC30A9Q6PML9 568 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 ABTB1Q969K4 478 aaPredicted RBP8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 PABPC5Q96DU9 382 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 C7orf25Q9BPX7 421 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 MRPL45Q9BRJ2 306 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 ZBP1Q9H171 429 aa8.36□□□□□ -1.07
LIMCH1-219ENST00000514096 NARSO43776 548 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 CALUO43852 315 aaPredicted RBP8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 SEC24AO95486 1093 aa8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 FAM163BP0C2L3 166 aa8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 CCDC130P13994 396 aa8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 GABRR2P28476 465 aa8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 RGS7P49802 495 aa8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 CORO7P57737 925 aa8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 RNASE9P60153 205 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 UBE2HP62256 183 aa8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 TSPY1Q01534 308 aa8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 SNW1Q13573 536 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 CRYMQ14894 314 aa8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 LPAL2Q16609 132 aa8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 PABPC1LQ4VXU2 614 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 C2CD6Q53TS8 623 aa8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 ZNF667Q5HYK9 610 aa8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 CAPRIN2Q6IMN6 1127 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 DDX53Q86TM3 631 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 ADGRF2Q8IZF7 708 aa8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 THEM5Q8N1Q8 247 aa8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 SDR16C5Q8N3Y7 309 aa8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 OR10T2Q8NGX3 314 aa8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 MIPOL1Q8TD10 442 aa8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 CPLX3Q8WVH0 158 aa8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 NDRG1Q92597 394 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 CEP295NLQ96MC4 621 aa8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 HEXIM2Q96MH2 286 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 PLEKHG4BQ96PX9 1271 aa8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 PPP1R10Q96QC0 940 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 FAM107BQ9H098 131 aa8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 RC3H2Q9HBD1 1191 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 L1RE1Q9UN81 338 aa8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 KLRC4O43908 158 aa8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 LINC00271P0C7V0 271 aa8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 IL4RP24394 825 aa8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 CYP4A22Q5TCH4 519 aa8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 PDZD4Q76G19 769 aaPredicted RBP8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 MRPL10Q7Z7H8 261 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 SPATA2LQ8IUW3 424 aaPredicted RBP8.35□□□□□ -1.07
LIMCH1-219ENST00000514096 PASD1Q8IV76 773 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms