RNA–Protein interactions for RNA: ENST00000511439.5

TOPBP1-208, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 5

Gene TOPBP1, Length 1,142 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-208ENST00000511439 TMX3Q96JJ7 454 aa4.48□□□□□ -1.69
TOPBP1-208ENST00000511439 CLPTM1LQ96KA5 538 aa4.48□□□□□ -1.69
TOPBP1-208ENST00000511439 C8orf48Q96LL4 319 aa4.48□□□□□ -1.69
TOPBP1-208ENST00000511439 GUCD1Q96NT3 240 aa4.48□□□□□ -1.69
TOPBP1-208ENST00000511439 CDK19Q9BWU1 502 aa4.48□□□□□ -1.69
TOPBP1-208ENST00000511439 GLIS2Q9BZE0 524 aaPredicted RBP4.48□□□□□ -1.69
TOPBP1-208ENST00000511439 GOLGA6AQ9NYA3 693 aa4.48□□□□□ -1.69
TOPBP1-208ENST00000511439 CALCOCO1Q9P1Z2 691 aa4.48□□□□□ -1.69
TOPBP1-208ENST00000511439 PTGFRNQ9P2B2 879 aa4.48□□□□□ -1.69
TOPBP1-208ENST00000511439 COL4A3Q01955 1670 aa4.48□□□□□ -1.69
TOPBP1-208ENST00000511439 MAP2P11137 1827 aaKnown RBP4.47□□□□□ -1.69
TOPBP1-208ENST00000511439 PRR5-ARHGAP8B1AHC4 643 aa4.47□□□□□ -1.69
TOPBP1-208ENST00000511439 ALDH2P05091 517 aa4.47□□□□□ -1.69
TOPBP1-208ENST00000511439 SNRPA1P09661 255 aaKnown RBP4.47□□□□□ -1.69
TOPBP1-208ENST00000511439 RAP2AP10114 183 aa4.47□□□□□ -1.69
TOPBP1-208ENST00000511439 MGAT1P26572 445 aa4.47□□□□□ -1.69
TOPBP1-208ENST00000511439 CLRN1P58418 232 aa4.47□□□□□ -1.69
TOPBP1-208ENST00000511439 CTXN1P60606 82 aa4.47□□□□□ -1.69
TOPBP1-208ENST00000511439 TLE1Q04724 770 aa4.47□□□□□ -1.69
TOPBP1-208ENST00000511439 CSRP2Q16527 193 aa4.47□□□□□ -1.69
TOPBP1-208ENST00000511439 DACT2Q5SW24 774 aa4.47□□□□□ -1.69
TOPBP1-208ENST00000511439 THEMIS2Q5TEJ8 643 aa4.47□□□□□ -1.69
TOPBP1-208ENST00000511439 SEM1Q6ZVN7 128 aa4.47□□□□□ -1.69
TOPBP1-208ENST00000511439 GDF7Q7Z4P5 450 aa4.47□□□□□ -1.69
TOPBP1-208ENST00000511439 PLXDC1Q8IUK5 500 aa4.47□□□□□ -1.69
TOPBP1-208ENST00000511439 DCBLD1Q8N8Z6 715 aa4.47□□□□□ -1.69
TOPBP1-208ENST00000511439 SUPT20HQ8NEM7 779 aa4.47□□□□□ -1.69
TOPBP1-208ENST00000511439 GPR150Q8NGU9 434 aa4.47□□□□□ -1.69
TOPBP1-208ENST00000511439 ZNF622Q969S3 477 aaKnown RBP eCLIP4.47□□□□□ -1.69
TOPBP1-208ENST00000511439 RUNDC1Q96C34 613 aa4.47□□□□□ -1.69
TOPBP1-208ENST00000511439 ACO2Q99798 780 aaKnown RBP4.47□□□□□ -1.69
TOPBP1-208ENST00000511439 MRI1Q9BV20 369 aa4.47□□□□□ -1.69
TOPBP1-208ENST00000511439 CPEB1Q9BZB8 566 aaKnown RBP4.47□□□□□ -1.69
TOPBP1-208ENST00000511439 GEMIN8Q9NWZ8 242 aaKnown RBP4.47□□□□□ -1.69
TOPBP1-208ENST00000511439 FAM30AQ9NZY2 134 aa4.47□□□□□ -1.69
TOPBP1-208ENST00000511439 SLC23A1Q9UHI7 598 aa4.47□□□□□ -1.69
TOPBP1-208ENST00000511439 POLHQ9Y253 713 aa4.47□□□□□ -1.69
TOPBP1-208ENST00000511439 EYSQ5T1H1 3165 aa4.47□□□□□ -1.69
TOPBP1-208ENST00000511439 CGNL1Q0VF96 1302 aa4.46□□□□□ -1.69
TOPBP1-208ENST00000511439 PCDH11XQ9BZA7 1347 aa4.46□□□□□ -1.69
TOPBP1-208ENST00000511439 PCDH11YQ9BZA8 1340 aa4.46□□□□□ -1.69
TOPBP1-208ENST00000511439 USP42Q9H9J4 1324 aaKnown RBP4.46□□□□□ -1.69
TOPBP1-208ENST00000511439 LAMA2P24043 3122 aaKnown RBP4.46□□□□□ -1.69
TOPBP1-208ENST00000511439 LRRC14BA6NHZ5 514 aa4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 TMEM200CA6NKL6 621 aa4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 H3BML4 177 aa4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 ERC2O15083 957 aa4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 FTLP02792 175 aaPredicted RBP4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 HLA-DOAP06340 250 aa4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 SPATA31D3P0C874 917 aa4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 ATP5JP18859 108 aa4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 BMPR1AP36894 532 aa4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 EPS15P42566 896 aa4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 MAP2K6P52564 334 aa4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 HK3P52790 923 aa4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 ZNF280AP59817 542 aaPredicted RBP4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 BLOC1S1P78537 153 aa4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 MRPS21P82921 87 aaKnown RBP4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 KCTD2Q14681 263 aa4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 GFOD2Q3B7J2 385 aa4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 KHDC1Q4VXA5 237 aaKnown RBP4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 HSP90AB2PQ58FF8 381 aa4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 CCDC181Q5TID7 509 aa4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 FAM109BQ6ICB4 259 aaPredicted RBP4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 DRICH1Q6PGQ1 229 aaPredicted RBP4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 SYCE2Q6PIF2 218 aa4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 SPATA31D4Q6ZUB0 917 aa4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 ARHGEF19Q8IW93 802 aa4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 LCORLQ8N3X6 602 aa4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 C3orf20Q8ND61 904 aa4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 RGMAQ96B86 450 aa4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 ZNF764Q96H86 408 aaPredicted RBP4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 ZNF333Q96JL9 665 aa4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 MYOCQ99972 504 aa4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 VRK1Q99986 396 aaPredicted RBP4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 GBA2Q9HCG7 927 aaPredicted RBP4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 KMT5AQ9NQR1 393 aa4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 TRPM5Q9NZQ8 1165 aa4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 STAP2Q9UGK3 403 aa4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 KIAA0100Q14667 2235 aaKnown RBP4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 PRUNE2Q8WUY3 3088 aa4.46□□□□□ -1.7
TOPBP1-208ENST00000511439 CENPVL1A0A0U1RR11 272 aa4.45□□□□□ -1.7
TOPBP1-208ENST00000511439 VSTM5A8MXK1 200 aa4.45□□□□□ -1.7
TOPBP1-208ENST00000511439 AHRRA9YTQ3 701 aa4.45□□□□□ -1.7
TOPBP1-208ENST00000511439 CTNND1O60716 968 aaKnown RBP4.45□□□□□ -1.7
TOPBP1-208ENST00000511439 MALP21145 153 aa4.45□□□□□ -1.7
TOPBP1-208ENST00000511439 CD38P28907 300 aa4.45□□□□□ -1.7
TOPBP1-208ENST00000511439 TM4SF1P30408 202 aa4.45□□□□□ -1.7
TOPBP1-208ENST00000511439 APOBEC3AP31941 199 aaPredicted RBP4.45□□□□□ -1.7
TOPBP1-208ENST00000511439 ZEB1P37275 1124 aaPredicted RBP4.45□□□□□ -1.7
TOPBP1-208ENST00000511439 IL12RB1P42701 662 aa4.45□□□□□ -1.7
TOPBP1-208ENST00000511439 MXRA7P84157 204 aa4.45□□□□□ -1.7
TOPBP1-208ENST00000511439 SNAPC2Q13487 334 aa4.45□□□□□ -1.7
TOPBP1-208ENST00000511439 ERCC6LQ2NKX8 1250 aa4.45□□□□□ -1.7
TOPBP1-208ENST00000511439 CCDC93Q567U6 631 aa4.45□□□□□ -1.7
TOPBP1-208ENST00000511439 OLFML1Q6UWY5 402 aa4.45□□□□□ -1.7
TOPBP1-208ENST00000511439 Q6YL49 198 aa4.45□□□□□ -1.7
TOPBP1-208ENST00000511439 GADL1Q6ZQY3 521 aa4.45□□□□□ -1.7
TOPBP1-208ENST00000511439 ADGRG3Q86Y34 549 aa4.45□□□□□ -1.7
TOPBP1-208ENST00000511439 DENND1CQ8IV53 801 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms