RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 FAM78AQ5JUQ0 283 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 TANGO2Q6ICL3 276 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 DPH6Q7L8W6 267 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 TRIM46Q7Z4K8 759 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 DNAJB7Q7Z6W7 309 aaPredicted RBP8.6□□□□□ -1.03
SCN1A-207ENST00000507401 ITIH5Q86UX2 942 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 CCDC105Q8IYK2 499 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 DCP1BQ8IZD4 617 aaKnown RBP8.6□□□□□ -1.03
SCN1A-207ENST00000507401 TMEM86AQ8N2M4 240 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 TMEM130Q8N3G9 435 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 DTWD2Q8NBA8 298 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 CXorf38Q8TB03 319 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 FAM174AQ8TBP5 190 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 SPPL2BQ8TCT7 592 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 TMEM174Q8WUU8 243 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 SMARCD2Q92925 531 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 PSMG2Q969U7 264 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 SAAL1Q96ER3 474 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 ASB16Q96NS5 453 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 NCAPGQ9BPX3 1015 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 ACBD6Q9BR61 282 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 TUBB2BQ9BVA1 445 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 FGFBP2Q9BYJ0 223 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 NAT10Q9H0A0 1025 aaKnown RBP8.6□□□□□ -1.03
SCN1A-207ENST00000507401 ZFP14Q9HCL3 533 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 TRPV5Q9NQA5 729 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 INTS13Q9NVM9 706 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 ITGA11Q9UKX5 1188 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 CA14Q9ULX7 337 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 AGAP1Q9UPQ3 857 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 SIT1Q9Y3P8 196 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 YIPF1Q9Y548 306 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 UBE4BO95155 1302 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 KANSL1LA0AUZ9 987 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 SOBPA7XYQ1 873 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 H0Y858 1186 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 GOLGA6L19H0YKK7 550 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 TGFB1I1O43294 461 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 HUS1O60921 280 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 ITGB3P05106 788 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 MYL1P05976 194 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 OR4Q2P0C623 313 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 GLULP15104 373 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 CEBPBP17676 345 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 PSMC3P17980 439 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 RFX1P22670 979 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 USP8P40818 1118 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 NBL1P41271 181 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 CCR2P41597 374 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 DNM1Q05193 864 aaKnown RBP8.59□□□□□ -1.03
SCN1A-207ENST00000507401 TYRO3Q06418 890 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 MYO1EQ12965 1108 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 PSMD2Q13200 908 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 NNTQ13423 1086 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 NFE2Q16621 373 aaPredicted RBP8.59□□□□□ -1.03
SCN1A-207ENST00000507401 BMT2Q1RMZ1 405 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 FAM26FQ5R3K3 315 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 FOXD4L5Q5VV16 416 aaPredicted RBP8.59□□□□□ -1.03
SCN1A-207ENST00000507401 WSCD1Q658N2 575 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 ICE2Q659A1 982 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 CCDC186Q7Z3E2 898 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 LIMS2Q7Z4I7 341 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 LRRTM3Q86VH5 581 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 MFSD6LQ8IWD5 586 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 C12orf56Q8IXR9 622 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 CSGALNACT2Q8N6G5 542 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 TOP6BLQ8N6T0 577 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 C1orf127Q8N9H9 656 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 ATAD1Q8NBU5 361 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 ZSWIM2Q8NEG5 633 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 ARMC2Q8NEN0 867 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 OR10T2Q8NGX3 314 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 DEPDC1BQ8WUY9 529 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 SCFD1Q8WVM8 642 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 FOXD4L4Q8WXT5 416 aaPredicted RBP8.59□□□□□ -1.03
SCN1A-207ENST00000507401 ING5Q8WYH8 240 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 DNASE1L2Q92874 299 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 IRF7Q92985 503 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 HPS3Q969F9 1004 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 TCEAL4Q96EI5 215 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 C16orf45Q96MC5 204 aaPredicted RBP8.59□□□□□ -1.03
SCN1A-207ENST00000507401 PGLYRP2Q96PD5 576 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 TRMT61BQ9BVS5 477 aaKnown RBP8.59□□□□□ -1.03
SCN1A-207ENST00000507401 TRIM5Q9C035 493 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 DNAJC25Q9H1X3 360 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 CRISPLD1Q9H336 500 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 PCIF1Q9H4Z3 704 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 TBC1D17Q9HA65 648 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 PDE11AQ9HCR9 933 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 HSPBP1Q9NZL4 362 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 DLGAP2Q9P1A6 1054 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 ZMYM5Q9UJ78 669 aa8.59□□□□□ -1.03
SCN1A-207ENST00000507401 GOLGA8IPA6NC78 632 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 GOLGA6L4A6NEF3 574 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 GOLGA8JA6NMD2 632 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 GABRDO14764 452 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 NCAM2O15394 837 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 CAPN5O15484 640 aaPredicted RBP8.58□□□□□ -1.04
SCN1A-207ENST00000507401 GADD45BO75293 160 aaPredicted RBP8.58□□□□□ -1.04
SCN1A-207ENST00000507401 TNNC2P02585 160 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms