RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 PLEKHA5Q9HAU0 1116 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 PDGFCQ9NRA1 345 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 KLHL11Q9NVR0 708 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.59□□□□□ -0.39
NUP54-202ENST00000502850 RRN3P2A6NIE6 340 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 H0YHG0 523 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 M0QYV0 167 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 SGK1O00141 431 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 LRCH4O75427 683 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 MICAL2O94851 1124 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 GJB1P08034 283 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 ARF4P18085 180 aaPredicted RBP12.59□□□□□ -0.39
NUP54-202ENST00000502850 PHBP35232 272 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 RFC1P35251 1148 aaPredicted RBP12.59□□□□□ -0.39
NUP54-202ENST00000502850 GRM5P41594 1212 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 GTF2A2P52657 109 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 GPS1Q13098 491 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 IFT88Q13099 833 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 IRF5Q13568 498 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 RASA2Q15283 850 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 KCTD19Q17RG1 926 aaPredicted RBP12.59□□□□□ -0.39
NUP54-202ENST00000502850 MAMDC4Q6UXC1 1216 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 ANKS1BQ7Z6G8 1248 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 ZNF317Q96PQ6 595 aaPredicted RBP12.59□□□□□ -0.39
NUP54-202ENST00000502850 SMYD3Q9H7B4 428 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 RSAD1Q9HA92 442 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 LRRC4CQ9HCJ2 640 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 METTL5Q9NRN9 209 aaKnown RBP12.59□□□□□ -0.39
NUP54-202ENST00000502850 NKIRAS1Q9NYS0 192 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 MORF4L1Q9UBU8 362 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 FETUBQ9UGM5 382 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 KAT6AQ92794 2004 aa12.58□□□□□ -0.4
NUP54-202ENST00000502850 H3BRB1 525 aa12.58□□□□□ -0.4
NUP54-202ENST00000502850 APOC4-APOC2K7ER74 178 aa12.58□□□□□ -0.4
NUP54-202ENST00000502850 MCF2LO15068 1137 aa12.58□□□□□ -0.4
NUP54-202ENST00000502850 TSPAN1O60635 241 aa12.58□□□□□ -0.4
NUP54-202ENST00000502850 APOC2P02655 101 aa12.58□□□□□ -0.4
NUP54-202ENST00000502850 GHRP10912 638 aa12.58□□□□□ -0.4
NUP54-202ENST00000502850 HOXD8P13378 290 aaPredicted RBP12.58□□□□□ -0.4
NUP54-202ENST00000502850 TSHRP16473 764 aa12.58□□□□□ -0.4
NUP54-202ENST00000502850 KDELR1P24390 212 aa12.58□□□□□ -0.4
NUP54-202ENST00000502850 RAP1GAPP47736 663 aa12.58□□□□□ -0.4
NUP54-202ENST00000502850 LIG3P49916 1009 aa12.58□□□□□ -0.4
NUP54-202ENST00000502850 PLCB3Q01970 1234 aa12.58□□□□□ -0.4
NUP54-202ENST00000502850 TFDP2Q14188 446 aa12.58□□□□□ -0.4
NUP54-202ENST00000502850 FAM47CQ5HY64 1035 aa12.58□□□□□ -0.4
NUP54-202ENST00000502850 SGSM3Q96HU1 749 aa12.58□□□□□ -0.4
NUP54-202ENST00000502850 CPXM1Q96SM3 734 aa12.58□□□□□ -0.4
NUP54-202ENST00000502850 PRMT1Q99873 361 aaKnown RBP12.58□□□□□ -0.4
NUP54-202ENST00000502850 CNPY3Q9BT09 278 aa12.58□□□□□ -0.4
NUP54-202ENST00000502850 NT5C1AQ9BXI3 368 aa12.58□□□□□ -0.4
NUP54-202ENST00000502850 ELOVL4Q9GZR5 314 aa12.58□□□□□ -0.4
NUP54-202ENST00000502850 KDM4CQ9H3R0 1056 aa12.58□□□□□ -0.4
NUP54-202ENST00000502850 R3HDMLQ9H3Y0 253 aa12.58□□□□□ -0.4
NUP54-202ENST00000502850 TUT1Q9H6E5 874 aaKnown RBP12.58□□□□□ -0.4
NUP54-202ENST00000502850 SAYSD1Q9NPB0 183 aa12.58□□□□□ -0.4
NUP54-202ENST00000502850 DPP3Q9NY33 737 aa12.58□□□□□ -0.4
NUP54-202ENST00000502850 SLC5A4Q9NY91 659 aa12.58□□□□□ -0.4
NUP54-202ENST00000502850 AGAP1Q9UPQ3 857 aa12.58□□□□□ -0.4
NUP54-202ENST00000502850 A0A1B0GUA9 196 aa12.57□□□□□ -0.4
NUP54-202ENST00000502850 EXOC1LA0A1B0GW35 172 aa12.57□□□□□ -0.4
NUP54-202ENST00000502850 TMEM120BA0PK00 339 aa12.57□□□□□ -0.4
NUP54-202ENST00000502850 C3orf70A6NLC5 250 aaPredicted RBP12.57□□□□□ -0.4
NUP54-202ENST00000502850 ERBB2P04626 1255 aa12.57□□□□□ -0.4
NUP54-202ENST00000502850 IQCF3P0C7M6 154 aa12.57□□□□□ -0.4
NUP54-202ENST00000502850 GPD1P21695 349 aa12.57□□□□□ -0.4
NUP54-202ENST00000502850 ZNF143P52747 638 aaPredicted RBP12.57□□□□□ -0.4
NUP54-202ENST00000502850 SLC18A1P54219 525 aa12.57□□□□□ -0.4
NUP54-202ENST00000502850 ARL4CP56559 192 aa12.57□□□□□ -0.4
NUP54-202ENST00000502850 INHBEP58166 350 aa12.57□□□□□ -0.4
NUP54-202ENST00000502850 GRIK4Q16099 956 aa12.57□□□□□ -0.4
NUP54-202ENST00000502850 DGKDQ16760 1214 aa12.57□□□□□ -0.4
NUP54-202ENST00000502850 SLC10A6Q3KNW5 377 aa12.57□□□□□ -0.4
NUP54-202ENST00000502850 DUSP28Q4G0W2 176 aa12.57□□□□□ -0.4
NUP54-202ENST00000502850 ATP13A4Q4VNC1 1196 aa12.57□□□□□ -0.4
NUP54-202ENST00000502850 FAM102AQ5T9C2 384 aaPredicted RBP12.57□□□□□ -0.4
NUP54-202ENST00000502850 RNASEH2BQ5TBB1 312 aaKnown RBP12.57□□□□□ -0.4
NUP54-202ENST00000502850 LCLAT1Q6UWP7 414 aa12.57□□□□□ -0.4
NUP54-202ENST00000502850 ANKRD23Q86SG2 305 aa12.57□□□□□ -0.4
NUP54-202ENST00000502850 CDR2LQ86X02 465 aaPredicted RBP12.57□□□□□ -0.4
NUP54-202ENST00000502850 VSIG1Q86XK7 387 aa12.57□□□□□ -0.4
NUP54-202ENST00000502850 PPIL6Q8IXY8 311 aa12.57□□□□□ -0.4
NUP54-202ENST00000502850 TMEM192Q8IY95 271 aa12.57□□□□□ -0.4
NUP54-202ENST00000502850 KCTD6Q8NC69 237 aa12.57□□□□□ -0.4
NUP54-202ENST00000502850 CMASQ8NFW8 434 aaPredicted RBP12.57□□□□□ -0.4
NUP54-202ENST00000502850 CXorf38Q8TB03 319 aa12.57□□□□□ -0.4
NUP54-202ENST00000502850 RSAD2Q8WXG1 361 aa12.57□□□□□ -0.4
NUP54-202ENST00000502850 HEXIM2Q96MH2 286 aaKnown RBP12.57□□□□□ -0.4
NUP54-202ENST00000502850 TSPAN18Q96SJ8 248 aa12.57□□□□□ -0.4
NUP54-202ENST00000502850 C16orf70Q9BSU1 422 aa12.57□□□□□ -0.4
NUP54-202ENST00000502850 SDCBP2Q9H190 292 aa12.57□□□□□ -0.4
NUP54-202ENST00000502850 ZWILCHQ9H900 591 aa12.57□□□□□ -0.4
NUP54-202ENST00000502850 SLC24A2Q9UI40 661 aa12.57□□□□□ -0.4
NUP54-202ENST00000502850 MANSC4A6NHS7 340 aaPredicted RBP12.56□□□□□ -0.4
NUP54-202ENST00000502850 PDHXO00330 501 aa12.56□□□□□ -0.4
NUP54-202ENST00000502850 ALOX15BO15296 676 aa12.56□□□□□ -0.4
NUP54-202ENST00000502850 CST8O60676 142 aa12.56□□□□□ -0.4
NUP54-202ENST00000502850 VIMP08670 466 aaKnown RBP12.56□□□□□ -0.4
NUP54-202ENST00000502850 ZNF286BP0CG31 522 aa12.56□□□□□ -0.4
NUP54-202ENST00000502850 CYP2C8P10632 490 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms