RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 DMAC2Q9NW81 257 aa11.42□□□□□ -0.58
COL6A3-214ENST00000493608 TOR4AQ9NXH8 423 aa11.42□□□□□ -0.58
COL6A3-214ENST00000493608 CGNQ9P2M7 1197 aaKnown RBP11.42□□□□□ -0.58
COL6A3-214ENST00000493608 HSFX1Q9UBD0 423 aa11.42□□□□□ -0.58
COL6A3-214ENST00000493608 KIF26AQ9ULI4 1882 aaPredicted RBP11.42□□□□□ -0.58
COL6A3-214ENST00000493608 DMDP11532 3685 aa11.41□□□□□ -0.58
COL6A3-214ENST00000493608 OBSL1O75147 1896 aa11.41□□□□□ -0.58
COL6A3-214ENST00000493608 KANSL1LA0AUZ9 987 aa11.41□□□□□ -0.58
COL6A3-214ENST00000493608 FAM187AA6NFU0 413 aa11.41□□□□□ -0.58
COL6A3-214ENST00000493608 FAM170BA6NMN3 283 aa11.41□□□□□ -0.58
COL6A3-214ENST00000493608 CLSTN1O94985 981 aa11.41□□□□□ -0.58
COL6A3-214ENST00000493608 HMGA1P17096 107 aaKnown RBP11.41□□□□□ -0.58
COL6A3-214ENST00000493608 PSMC3P17980 439 aa11.41□□□□□ -0.58
COL6A3-214ENST00000493608 DLG4P78352 724 aa11.41□□□□□ -0.58
COL6A3-214ENST00000493608 TRPC3Q13507 836 aa11.41□□□□□ -0.58
COL6A3-214ENST00000493608 ANGPT1Q15389 498 aa11.41□□□□□ -0.58
COL6A3-214ENST00000493608 NFE2Q16621 373 aaPredicted RBP11.41□□□□□ -0.58
COL6A3-214ENST00000493608 WDR72Q3MJ13 1102 aa11.41□□□□□ -0.58
COL6A3-214ENST00000493608 ARHGAP15Q53QZ3 475 aa11.41□□□□□ -0.58
COL6A3-214ENST00000493608 CEP135Q66GS9 1140 aa11.41□□□□□ -0.58
COL6A3-214ENST00000493608 DPH6Q7L8W6 267 aa11.41□□□□□ -0.58
COL6A3-214ENST00000493608 LIMS2Q7Z4I7 341 aa11.41□□□□□ -0.58
COL6A3-214ENST00000493608 SPATA2LQ8IUW3 424 aaPredicted RBP11.41□□□□□ -0.58
COL6A3-214ENST00000493608 MFSD6LQ8IWD5 586 aa11.41□□□□□ -0.58
COL6A3-214ENST00000493608 SCN4BQ8IWT1 228 aa11.41□□□□□ -0.58
COL6A3-214ENST00000493608 PJA1Q8NG27 643 aa11.41□□□□□ -0.58
COL6A3-214ENST00000493608 TTC8Q8TAM2 541 aa11.41□□□□□ -0.58
COL6A3-214ENST00000493608 PARD3BQ8TEW8 1205 aa11.41□□□□□ -0.58
COL6A3-214ENST00000493608 SYT15Q9BQS2 421 aa11.41□□□□□ -0.58
COL6A3-214ENST00000493608 MRPL45Q9BRJ2 306 aaKnown RBP11.41□□□□□ -0.58
COL6A3-214ENST00000493608 SLC46A2Q9BY10 475 aa11.41□□□□□ -0.58
COL6A3-214ENST00000493608 GPR88Q9GZN0 384 aa11.41□□□□□ -0.58
COL6A3-214ENST00000493608 TRPV4Q9HBA0 871 aa11.41□□□□□ -0.58
COL6A3-214ENST00000493608 CRTAC1Q9NQ79 661 aa11.41□□□□□ -0.58
COL6A3-214ENST00000493608 DLGAP2Q9P1A6 1054 aa11.41□□□□□ -0.58
COL6A3-214ENST00000493608 NXF1Q9UBU9 619 aaKnown RBP11.41□□□□□ -0.58
COL6A3-214ENST00000493608 NME7Q9Y5B8 376 aa11.41□□□□□ -0.58
COL6A3-214ENST00000493608 GREB1Q4ZG55 1949 aa11.41□□□□□ -0.58
COL6A3-214ENST00000493608 NUP210Q8TEM1 1887 aaPredicted RBP11.4□□□□□ -0.58
COL6A3-214ENST00000493608 PIEZO1Q92508 2521 aa11.4□□□□□ -0.58
COL6A3-214ENST00000493608 MYO15AQ9UKN7 3530 aa11.4□□□□□ -0.58
COL6A3-214ENST00000493608 MYH10P35580 1976 aa11.4□□□□□ -0.58
COL6A3-214ENST00000493608 LRRIQ3A6PVS8 624 aaPredicted RBP11.4□□□□□ -0.58
COL6A3-214ENST00000493608 PDXKO00764 312 aa11.4□□□□□ -0.58
COL6A3-214ENST00000493608 ZNF263O14978 683 aa11.4□□□□□ -0.58
COL6A3-214ENST00000493608 RHOBTB3O94955 611 aa11.4□□□□□ -0.58
COL6A3-214ENST00000493608 PRAMEF12O95522 483 aa11.4□□□□□ -0.58
COL6A3-214ENST00000493608 NR3C1P04150 777 aa11.4□□□□□ -0.58
COL6A3-214ENST00000493608 MYL1P05976 194 aa11.4□□□□□ -0.58
COL6A3-214ENST00000493608 WARSP23381 471 aaKnown RBP11.4□□□□□ -0.58
COL6A3-214ENST00000493608 BDNFP23560 247 aa11.4□□□□□ -0.58
COL6A3-214ENST00000493608 PCSK1P29120 753 aa11.4□□□□□ -0.58
COL6A3-214ENST00000493608 GNL1P36915 607 aaPredicted RBP11.4□□□□□ -0.58
COL6A3-214ENST00000493608 CDH8P55286 799 aa11.4□□□□□ -0.58
COL6A3-214ENST00000493608 TNNC1P63316 161 aa11.4□□□□□ -0.58
COL6A3-214ENST00000493608 PRKCQQ04759 706 aa11.4□□□□□ -0.58
COL6A3-214ENST00000493608 BIRC3Q13489 604 aa11.4□□□□□ -0.58
COL6A3-214ENST00000493608 TDRD10Q5VZ19 366 aaKnown RBP11.4□□□□□ -0.58
COL6A3-214ENST00000493608 TXNDC8Q6A555 127 aa11.4□□□□□ -0.58
COL6A3-214ENST00000493608 FAM171BQ6P995 826 aa11.4□□□□□ -0.58
COL6A3-214ENST00000493608 TMEM150AQ86TG1 271 aa11.4□□□□□ -0.58
COL6A3-214ENST00000493608 YAF2Q8IY57 180 aa11.4□□□□□ -0.58
COL6A3-214ENST00000493608 OR6B3Q8NGW1 331 aa11.4□□□□□ -0.58
COL6A3-214ENST00000493608 GOLGA5Q8TBA6 731 aa11.4□□□□□ -0.58
COL6A3-214ENST00000493608 ERCC4Q92889 916 aaPredicted RBP11.4□□□□□ -0.58
COL6A3-214ENST00000493608 IRF7Q92985 503 aa11.4□□□□□ -0.58
COL6A3-214ENST00000493608 CCDC47Q96A33 483 aaKnown RBP11.4□□□□□ -0.58
COL6A3-214ENST00000493608 ZFYVE19Q96K21 471 aa11.4□□□□□ -0.58
COL6A3-214ENST00000493608 GCNAQ96QF7 691 aa11.4□□□□□ -0.58
COL6A3-214ENST00000493608 DDX23Q9BUQ8 820 aaKnown RBP11.4□□□□□ -0.58
COL6A3-214ENST00000493608 IRF2BPLQ9H1B7 796 aa11.4□□□□□ -0.58
COL6A3-214ENST00000493608 SNX25Q9H3E2 840 aa11.4□□□□□ -0.58
COL6A3-214ENST00000493608 TASP1Q9H6P5 420 aa11.4□□□□□ -0.58
COL6A3-214ENST00000493608 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.4□□□□□ -0.58
COL6A3-214ENST00000493608 CDH9Q9ULB4 789 aa11.4□□□□□ -0.58
COL6A3-214ENST00000493608 NDRG2Q9UN36 371 aaKnown RBP11.4□□□□□ -0.58
COL6A3-214ENST00000493608 PTPRDP23468 1912 aa11.4□□□□□ -0.58
COL6A3-214ENST00000493608 ANAPC1Q9H1A4 1944 aa11.4□□□□□ -0.58
COL6A3-214ENST00000493608 ATG2BQ96BY7 2078 aa11.4□□□□□ -0.58
COL6A3-214ENST00000493608 GOLGA6L4A6NEF3 574 aa11.39□□□□□ -0.59
COL6A3-214ENST00000493608 SHISA7A6NL88 538 aa11.39□□□□□ -0.59
COL6A3-214ENST00000493608 SLC38A8A6NNN8 435 aa11.39□□□□□ -0.59
COL6A3-214ENST00000493608 CALUO43852 315 aaPredicted RBP11.39□□□□□ -0.59
COL6A3-214ENST00000493608 VNN1O95497 513 aa11.39□□□□□ -0.59
COL6A3-214ENST00000493608 FGF19O95750 216 aa11.39□□□□□ -0.59
COL6A3-214ENST00000493608 F11P03951 625 aa11.39□□□□□ -0.59
COL6A3-214ENST00000493608 C4BPAP04003 597 aaKnown RBP11.39□□□□□ -0.59
COL6A3-214ENST00000493608 CSH1P0DML2 217 aa11.39□□□□□ -0.59
COL6A3-214ENST00000493608 CSH2P0DML3 217 aa11.39□□□□□ -0.59
COL6A3-214ENST00000493608 TARSP26639 723 aaKnown RBP11.39□□□□□ -0.59
COL6A3-214ENST00000493608 CDC25CP30307 473 aa11.39□□□□□ -0.59
COL6A3-214ENST00000493608 RAP1GAPP47736 663 aa11.39□□□□□ -0.59
COL6A3-214ENST00000493608 NLRP12P59046 1061 aa11.39□□□□□ -0.59
COL6A3-214ENST00000493608 CYP27A1Q02318 531 aa11.39□□□□□ -0.59
COL6A3-214ENST00000493608 PNOCQ13519 176 aa11.39□□□□□ -0.59
COL6A3-214ENST00000493608 MDH1BQ5I0G3 518 aa11.39□□□□□ -0.59
COL6A3-214ENST00000493608 SCARA5Q6ZMJ2 495 aa11.39□□□□□ -0.59
COL6A3-214ENST00000493608 ZNF852Q6ZMS4 543 aa11.39□□□□□ -0.59
COL6A3-214ENST00000493608 FRMD5Q7Z6J6 570 aa11.39□□□□□ -0.59
COL6A3-214ENST00000493608 SLC9A9Q8IVB4 645 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms