RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 VDRP11473 427 aa12.83□□□□□ -0.36
HDAC6-230ENST00000488543 PTPN20Q4JDL3 420 aa12.83□□□□□ -0.36
HDAC6-230ENST00000488543 PPP1R15BQ5SWA1 713 aa12.83□□□□□ -0.36
HDAC6-230ENST00000488543 ALS2CLQ60I27 953 aa12.83□□□□□ -0.36
HDAC6-230ENST00000488543 DEFB128Q7Z7B8 93 aa12.83□□□□□ -0.36
HDAC6-230ENST00000488543 ECHDC2Q86YB7 292 aa12.83□□□□□ -0.36
HDAC6-230ENST00000488543 FEZF2Q8TBJ5 459 aa12.83□□□□□ -0.36
HDAC6-230ENST00000488543 PPP1R10Q96QC0 940 aaKnown RBP12.83□□□□□ -0.36
HDAC6-230ENST00000488543 PAAF1Q9BRP4 392 aa12.83□□□□□ -0.36
HDAC6-230ENST00000488543 TSPYL1Q9H0U9 437 aa12.83□□□□□ -0.36
HDAC6-230ENST00000488543 MRPL47Q9HD33 250 aaKnown RBP12.83□□□□□ -0.36
HDAC6-230ENST00000488543 PARVAQ9NVD7 372 aa12.83□□□□□ -0.36
HDAC6-230ENST00000488543 TJP2Q9UDY2 1190 aa12.83□□□□□ -0.36
HDAC6-230ENST00000488543 AMACRQ9UHK6 382 aa12.83□□□□□ -0.36
HDAC6-230ENST00000488543 INPP5FQ9Y2H2 1132 aa12.83□□□□□ -0.36
HDAC6-230ENST00000488543 SCINQ9Y6U3 715 aa12.83□□□□□ -0.36
HDAC6-230ENST00000488543 MYO1FO00160 1098 aa12.83□□□□□ -0.36
HDAC6-230ENST00000488543 KRIT1O00522 736 aa12.83□□□□□ -0.36
HDAC6-230ENST00000488543 PYGMP11217 842 aa12.83□□□□□ -0.36
HDAC6-230ENST00000488543 TNFRSF8P28908 595 aa12.83□□□□□ -0.36
HDAC6-230ENST00000488543 UAP1Q16222 522 aaPredicted RBP12.83□□□□□ -0.36
HDAC6-230ENST00000488543 TTC39CQ8N584 583 aa12.83□□□□□ -0.36
HDAC6-230ENST00000488543 TRAIPQ9BWF2 469 aa12.83□□□□□ -0.36
HDAC6-230ENST00000488543 DPH5Q9H2P9 285 aa12.83□□□□□ -0.36
HDAC6-230ENST00000488543 RGS18Q9NS28 235 aa12.83□□□□□ -0.36
HDAC6-230ENST00000488543 SNX9Q9Y5X1 595 aa12.83□□□□□ -0.36
HDAC6-230ENST00000488543 TMEM191CA6NGB0 347 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 C9IYK1 514 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 BHMG1C9JSJ3 638 aaPredicted RBP12.82□□□□□ -0.36
HDAC6-230ENST00000488543 CCDC188H7C350 402 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 PITPNM1O00562 1244 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 FGFR1P11362 822 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 ITGB8P26012 769 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 SLC1A1P43005 524 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 RPL7AP62424 266 aaKnown RBP12.82□□□□□ -0.36
HDAC6-230ENST00000488543 ZNF252P-AS1Q0IIN9 211 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 CNGA2Q16280 664 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 TTC31Q49AM3 519 aaPredicted RBP12.82□□□□□ -0.36
HDAC6-230ENST00000488543 CYP4A22Q5TCH4 519 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 DAB2IPQ5VWQ8 1189 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 ZNF598Q86UK7 904 aaKnown RBP12.82□□□□□ -0.36
HDAC6-230ENST00000488543 ERICH1Q86X53 443 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 ZDHHC14Q8IZN3 488 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 SEZ6LQ9BYH1 1024 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 RSAD1Q9HA92 442 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 CEP83Q9Y592 693 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 SCN5AQ14524 2016 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 NDUFAB1O14561 156 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 TTI1O43156 1089 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 DAPK3O43293 454 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 THP07101 528 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 CDR1P51861 262 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 SOWAHAQ2M3V2 549 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 PLEKHG4Q58EX7 1191 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 SLC24A5Q71RS6 500 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 LIMS2Q7Z4I7 341 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 HEXIM2Q96MH2 286 aaKnown RBP12.82□□□□□ -0.36
HDAC6-230ENST00000488543 TOX2Q96NM4 488 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 TRIM51Q9BSJ1 452 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 NT5C1AQ9BXI3 368 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 MCOLN1Q9GZU1 580 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 C11orf49Q9H6J7 331 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 GIT1Q9Y2X7 761 aa12.82□□□□□ -0.36
HDAC6-230ENST00000488543 CASTOR2A6NHX0 329 aa12.81□□□□□ -0.36
HDAC6-230ENST00000488543 EBAG9O00559 213 aa12.81□□□□□ -0.36
HDAC6-230ENST00000488543 ENPP3O14638 875 aa12.81□□□□□ -0.36
HDAC6-230ENST00000488543 SART1O43290 800 aaKnown RBP12.81□□□□□ -0.36
HDAC6-230ENST00000488543 HCRTO43612 131 aa12.81□□□□□ -0.36
HDAC6-230ENST00000488543 EN2P19622 333 aaPredicted RBP12.81□□□□□ -0.36
HDAC6-230ENST00000488543 NR1D1P20393 614 aa12.81□□□□□ -0.36
HDAC6-230ENST00000488543 MAN1A1P33908 653 aa12.81□□□□□ -0.36
HDAC6-230ENST00000488543 HSD17B3P37058 310 aa12.81□□□□□ -0.36
HDAC6-230ENST00000488543 GPD2P43304 727 aa12.81□□□□□ -0.36
HDAC6-230ENST00000488543 CLCNKBP51801 687 aa12.81□□□□□ -0.36
HDAC6-230ENST00000488543 RWDD2BP57060 319 aa12.81□□□□□ -0.36
HDAC6-230ENST00000488543 TAS2R40P59535 323 aa12.81□□□□□ -0.36
HDAC6-230ENST00000488543 OGDHQ02218 1023 aa12.81□□□□□ -0.36
HDAC6-230ENST00000488543 SLC20A2Q08357 652 aa12.81□□□□□ -0.36
HDAC6-230ENST00000488543 SF3A3Q12874 501 aaKnown RBP eCLIP12.81□□□□□ -0.36
HDAC6-230ENST00000488543 SGO2Q562F6 1265 aa12.81□□□□□ -0.36
HDAC6-230ENST00000488543 DNAJC24Q6P3W2 148 aa12.81□□□□□ -0.36
HDAC6-230ENST00000488543 DDX27Q96GQ7 796 aaKnown RBP12.81□□□□□ -0.36
HDAC6-230ENST00000488543 CPXM1Q96SM3 734 aa12.81□□□□□ -0.36
HDAC6-230ENST00000488543 TMEM106CQ9BVX2 250 aa12.81□□□□□ -0.36
HDAC6-230ENST00000488543 TSPYL2Q9H2G4 693 aaPredicted RBP12.81□□□□□ -0.36
HDAC6-230ENST00000488543 TMEM39AQ9NV64 488 aa12.81□□□□□ -0.36
HDAC6-230ENST00000488543 KIAA1257Q9ULG3 409 aa12.81□□□□□ -0.36
HDAC6-230ENST00000488543 M0QYV0 167 aa12.81□□□□□ -0.36
HDAC6-230ENST00000488543 XPOTO43592 962 aaKnown RBP12.81□□□□□ -0.36
HDAC6-230ENST00000488543 ERBB2P04626 1255 aa12.81□□□□□ -0.36
HDAC6-230ENST00000488543 PFKMP08237 780 aa12.81□□□□□ -0.36
HDAC6-230ENST00000488543 LRPAP1P30533 357 aa12.81□□□□□ -0.36
HDAC6-230ENST00000488543 RAB27AP51159 221 aa12.81□□□□□ -0.36
HDAC6-230ENST00000488543 GSCP56915 257 aaPredicted RBP12.81□□□□□ -0.36
HDAC6-230ENST00000488543 FBXW10Q5XX13 1052 aa12.81□□□□□ -0.36
HDAC6-230ENST00000488543 LCLAT1Q6UWP7 414 aa12.81□□□□□ -0.36
HDAC6-230ENST00000488543 HACE1Q8IYU2 909 aa12.81□□□□□ -0.36
HDAC6-230ENST00000488543 C3orf20Q8ND61 904 aa12.81□□□□□ -0.36
HDAC6-230ENST00000488543 C3orf58Q8NDZ4 430 aa12.81□□□□□ -0.36
HDAC6-230ENST00000488543 KBTBD7Q8WVZ9 684 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms