RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 FAM71DQ8N9W8 422 aa18.84■□□□□ 0.61
VIM-206ENST00000487938 ERP27Q96DN0 273 aa18.84■□□□□ 0.61
VIM-206ENST00000487938 TWNKQ96RR1 684 aa18.84■□□□□ 0.61
VIM-206ENST00000487938 MYCBPQ99417 103 aaPredicted RBP18.84■□□□□ 0.61
VIM-206ENST00000487938 WDR83Q9BRX9 315 aaKnown RBP18.84■□□□□ 0.61
VIM-206ENST00000487938 ETNK1Q9HBU6 452 aa18.84■□□□□ 0.61
VIM-206ENST00000487938 SLC24A2Q9UI40 661 aa18.84■□□□□ 0.61
VIM-206ENST00000487938 GOLGA8RI6L899 631 aa18.83■□□□□ 0.61
VIM-206ENST00000487938 CSDE1O75534 798 aaKnown RBP18.83■□□□□ 0.61
VIM-206ENST00000487938 PGK2P07205 417 aa18.83■□□□□ 0.61
VIM-206ENST00000487938 EDNRBP24530 442 aa18.83■□□□□ 0.61
VIM-206ENST00000487938 MSH2P43246 934 aa18.83■□□□□ 0.61
VIM-206ENST00000487938 RAD23BP54727 409 aa18.83■□□□□ 0.61
VIM-206ENST00000487938 ARL4CP56559 192 aa18.83■□□□□ 0.61
VIM-206ENST00000487938 PDK4Q16654 411 aa18.83■□□□□ 0.61
VIM-206ENST00000487938 BBS12Q6ZW61 710 aa18.83■□□□□ 0.61
VIM-206ENST00000487938 DPH6Q7L8W6 267 aa18.83■□□□□ 0.61
VIM-206ENST00000487938 XYLT1Q86Y38 959 aa18.83■□□□□ 0.61
VIM-206ENST00000487938 FBXO36Q8NEA4 188 aa18.83■□□□□ 0.61
VIM-206ENST00000487938 FBF1Q8TES7 1133 aa18.83■□□□□ 0.61
VIM-206ENST00000487938 KLF6Q99612 283 aaPredicted RBP18.83■□□□□ 0.61
VIM-206ENST00000487938 HMGXB4Q9UGU5 601 aa18.83■□□□□ 0.61
VIM-206ENST00000487938 CHKBQ9Y259 395 aa18.83■□□□□ 0.61
VIM-206ENST00000487938 PIK3R2O00459 728 aa18.83■□□□□ 0.6
VIM-206ENST00000487938 USP2O75604 605 aaPredicted RBP18.83■□□□□ 0.6
VIM-206ENST00000487938 MOGSQ13724 837 aa18.83■□□□□ 0.6
VIM-206ENST00000487938 BBS9Q3SYG4 887 aa18.83■□□□□ 0.6
VIM-206ENST00000487938 EFHC2Q5JST6 749 aa18.83■□□□□ 0.6
VIM-206ENST00000487938 TSHZ1Q6ZSZ6 1077 aa18.83■□□□□ 0.6
VIM-206ENST00000487938 VSIG1Q86XK7 387 aa18.83■□□□□ 0.6
VIM-206ENST00000487938 RIOX2Q8IUF8 465 aa18.83■□□□□ 0.6
VIM-206ENST00000487938 PALM2Q8IXS6 379 aa18.83■□□□□ 0.6
VIM-206ENST00000487938 LHX5Q9H2C1 402 aa18.83■□□□□ 0.6
VIM-206ENST00000487938 MINDY3Q9H8M7 445 aa18.83■□□□□ 0.6
VIM-206ENST00000487938 PTPRHQ9HD43 1115 aa18.83■□□□□ 0.6
VIM-206ENST00000487938 SENP1Q9P0U3 644 aa18.83■□□□□ 0.6
VIM-206ENST00000487938 SIX4Q9UIU6 781 aa18.83■□□□□ 0.6
VIM-206ENST00000487938 NOP56O00567 594 aaKnown RBP18.82■□□□□ 0.6
VIM-206ENST00000487938 EDF1O60869 148 aaKnown RBP18.82■□□□□ 0.6
VIM-206ENST00000487938 UNC5CO95185 931 aa18.82■□□□□ 0.6
VIM-206ENST00000487938 CCNB1P14635 433 aa18.82■□□□□ 0.6
VIM-206ENST00000487938 MIPP30301 263 aa18.82■□□□□ 0.6
VIM-206ENST00000487938 SH3D19Q5HYK7 790 aa18.82■□□□□ 0.6
VIM-206ENST00000487938 ZNF667Q5HYK9 610 aa18.82■□□□□ 0.6
VIM-206ENST00000487938 NPNTQ6UXI9 565 aa18.82■□□□□ 0.6
VIM-206ENST00000487938 FAM167AQ96KS9 214 aa18.82■□□□□ 0.6
VIM-206ENST00000487938 GPR20Q99678 358 aa18.82■□□□□ 0.6
VIM-206ENST00000487938 CALN1Q9BXU9 219 aa18.82■□□□□ 0.6
VIM-206ENST00000487938 SMYD3Q9H7B4 428 aa18.82■□□□□ 0.6
VIM-206ENST00000487938 XPO7Q9UIA9 1087 aaKnown RBP18.82■□□□□ 0.6
VIM-206ENST00000487938 MED7O43513 233 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 B4GALT4O60513 344 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 TMEM63AO94886 807 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 ANP32DO95626 131 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 NFICP08651 508 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 TGFB3P10600 412 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 ALADP13716 330 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 PROZP22891 400 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 TARSP26639 723 aaKnown RBP18.81■□□□□ 0.6
VIM-206ENST00000487938 PHBP35232 272 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 CLCN3P51790 818 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 SLC18A1P54219 525 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 EIF3EP60228 445 aaKnown RBP18.81■□□□□ 0.6
VIM-206ENST00000487938 BASP1P80723 227 aaKnown RBP18.81■□□□□ 0.6
VIM-206ENST00000487938 CCDC15Q0P6D6 951 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 MMRN1Q13201 1228 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 SETDB1Q15047 1291 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 RAB6CQ53S08 254 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 SH3PXD2AQ5TCZ1 1133 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.81■□□□□ 0.6
VIM-206ENST00000487938 ZNF75CPQ92670 426 aaPredicted RBP18.81■□□□□ 0.6
VIM-206ENST00000487938 TMEM237Q96Q45 408 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 LRRC37BQ96QE4 947 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 PAFAH2Q99487 392 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 MAF1Q9H063 256 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 SPATC1LQ9H0A9 340 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 RAB6CQ9H0N0 254 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 RPF1Q9H9Y2 349 aaKnown RBP18.81■□□□□ 0.6
VIM-206ENST00000487938 HAO1Q9UJM8 370 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 USH1CQ9Y6N9 552 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 ACKR2O00590 384 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 IQCF3P0C7M6 154 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 VGLL4Q14135 290 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 GADL1Q6ZQY3 521 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 ATP11CQ8NB49 1132 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 TTC13Q8NBP0 860 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 SLC4A11Q8NBS3 891 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 UBA3Q8TBC4 463 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 N4BP2L2Q92802 583 aaPredicted RBP18.81■□□□□ 0.6
VIM-206ENST00000487938 COPS5Q92905 334 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 PPP1R16BQ96T49 567 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 CXorf56Q9H5V9 222 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 ZMYND8Q9ULU4 1186 aaPredicted RBP18.81■□□□□ 0.6
VIM-206ENST00000487938 EFR3BQ9Y2G0 817 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 MGAMO43451 1857 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 SSC5DA1L4H1 1573 aa18.81■□□□□ 0.6
VIM-206ENST00000487938 ITGB3P05106 788 aa18.8■□□□□ 0.6
VIM-206ENST00000487938 ADRA1DP25100 572 aa18.8■□□□□ 0.6
VIM-206ENST00000487938 NOL9Q5SY16 702 aaKnown RBP18.8■□□□□ 0.6
VIM-206ENST00000487938 ADGRD1Q6QNK2 874 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms