RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 PROSER3Q2NL68 480 aa4.09□□□□□ -1.75
VPS50-216ENST00000484954 AMOTQ4VCS5 1084 aa4.09□□□□□ -1.75
VPS50-216ENST00000484954 DEPDC1Q5TB30 811 aa4.09□□□□□ -1.75
VPS50-216ENST00000484954 SFRP4Q6FHJ7 346 aaPredicted RBP4.09□□□□□ -1.75
VPS50-216ENST00000484954 NPNTQ6UXI9 565 aa4.09□□□□□ -1.75
VPS50-216ENST00000484954 NAPRTQ6XQN6 538 aa4.09□□□□□ -1.75
VPS50-216ENST00000484954 PTF1AQ7RTS3 328 aa4.09□□□□□ -1.75
VPS50-216ENST00000484954 LRRC71Q8N4P6 559 aa4.09□□□□□ -1.75
VPS50-216ENST00000484954 SEMA6DQ8NFY4 1073 aa4.09□□□□□ -1.75
VPS50-216ENST00000484954 SMG7Q92540 1137 aaKnown RBP4.09□□□□□ -1.75
VPS50-216ENST00000484954 MAML1Q92585 1016 aa4.09□□□□□ -1.75
VPS50-216ENST00000484954 RUNDC1Q96C34 613 aa4.09□□□□□ -1.75
VPS50-216ENST00000484954 ZNF778Q96MU6 729 aa4.09□□□□□ -1.75
VPS50-216ENST00000484954 BRIP1Q9BX63 1249 aa4.09□□□□□ -1.75
VPS50-216ENST00000484954 B3GNT5Q9BYG0 378 aa4.09□□□□□ -1.75
VPS50-216ENST00000484954 SLC29A3Q9BZD2 475 aa4.09□□□□□ -1.75
VPS50-216ENST00000484954 SMURF2Q9HAU4 748 aa4.09□□□□□ -1.75
VPS50-216ENST00000484954 DUSP22Q9NRW4 184 aa4.09□□□□□ -1.75
VPS50-216ENST00000484954 WDR91A4D1P6 747 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 A6NNZ2 444 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 FER1L4A9Z1Z3 1794 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 BTN3A1O00481 513 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 RFPL1O75677 317 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 TUSC2O75896 110 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 USP19O94966 1318 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 PDE8BO95263 885 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 LATS1O95835 1130 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 ONECUT2O95948 504 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 AGFG1P52594 562 aaKnown RBP4.08□□□□□ -1.76
VPS50-216ENST00000484954 PDE1AP54750 535 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 EPHB1P54762 984 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 EEFSECP57772 596 aaKnown RBP4.08□□□□□ -1.76
VPS50-216ENST00000484954 GPR162Q16538 588 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 PLEKHG6Q3KR16 790 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 ODR4Q5SWX8 454 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 TEDDM1Q5T9Z0 273 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 CEP85Q6P2H3 762 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 ANKRD16Q6P6B7 361 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 DPY19L3Q6ZPD9 716 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 SLC29A4Q7RTT9 530 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 VGLL2Q8N8G2 317 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 FANCBQ8NB91 859 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 IL31RAQ8NI17 732 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 TMEM171Q8WVE6 324 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 XAGE5Q8WWM1 108 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 RAPGEF4Q8WZA2 1011 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 SH2D3AQ9BRG2 576 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 KRTAP4-4Q9BYR3 166 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 DPH1Q9BZG8 443 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 GLOD4Q9HC38 313 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 CNNM1Q9NRU3 951 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 PIH1D1Q9NWS0 290 aaKnown RBP4.08□□□□□ -1.76
VPS50-216ENST00000484954 SHOC2Q9UQ13 582 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 SNX14Q9Y5W7 946 aa4.08□□□□□ -1.76
VPS50-216ENST00000484954 A0A1W2PPL8 197 aa4.07□□□□□ -1.76
VPS50-216ENST00000484954 QSOX1O00391 747 aa4.07□□□□□ -1.76
VPS50-216ENST00000484954 TBX3O15119 743 aa4.07□□□□□ -1.76
VPS50-216ENST00000484954 SCGB1D2O95969 90 aa4.07□□□□□ -1.76
VPS50-216ENST00000484954 KCNA3P22001 575 aa4.07□□□□□ -1.76
VPS50-216ENST00000484954 MPGP29372 298 aa4.07□□□□□ -1.76
VPS50-216ENST00000484954 DGKEP52429 567 aa4.07□□□□□ -1.76
VPS50-216ENST00000484954 GTF2H3Q13889 308 aa4.07□□□□□ -1.76
VPS50-216ENST00000484954 E2F2Q14209 437 aa4.07□□□□□ -1.76
VPS50-216ENST00000484954 LLGL1Q15334 1064 aa4.07□□□□□ -1.76
VPS50-216ENST00000484954 CYP1B1Q16678 543 aa4.07□□□□□ -1.76
VPS50-216ENST00000484954 PTCHD3Q3KNS1 767 aa4.07□□□□□ -1.76
VPS50-216ENST00000484954 ANO6Q4KMQ2 910 aa4.07□□□□□ -1.76
VPS50-216ENST00000484954 AARS2Q5JTZ9 985 aaKnown RBP4.07□□□□□ -1.76
VPS50-216ENST00000484954 PCID2Q5JVF3 399 aa4.07□□□□□ -1.76
VPS50-216ENST00000484954 SUMO4Q6EEV6 95 aa4.07□□□□□ -1.76
VPS50-216ENST00000484954 ZNF366Q8N895 744 aa4.07□□□□□ -1.76
VPS50-216ENST00000484954 C9orf106Q8NAJ2 232 aa4.07□□□□□ -1.76
VPS50-216ENST00000484954 KBTBD7Q8WVZ9 684 aa4.07□□□□□ -1.76
VPS50-216ENST00000484954 TBC1D5Q92609 795 aa4.07□□□□□ -1.76
VPS50-216ENST00000484954 LENG8Q96PV6 779 aaPredicted RBP4.07□□□□□ -1.76
VPS50-216ENST00000484954 CAMKK2Q96RR4 588 aa4.07□□□□□ -1.76
VPS50-216ENST00000484954 FSD1LQ9BXM9 530 aa4.07□□□□□ -1.76
VPS50-216ENST00000484954 MS4A7Q9GZW8 240 aaPredicted RBP4.07□□□□□ -1.76
VPS50-216ENST00000484954 STK32BQ9NY57 414 aa4.07□□□□□ -1.76
VPS50-216ENST00000484954 ADAMTS5Q9UNA0 930 aa4.07□□□□□ -1.76
VPS50-216ENST00000484954 SH2B3Q9UQQ2 575 aa4.07□□□□□ -1.76
VPS50-216ENST00000484954 CTNND1O60716 968 aaKnown RBP4.06□□□□□ -1.76
VPS50-216ENST00000484954 JTBO76095 146 aa4.06□□□□□ -1.76
VPS50-216ENST00000484954 THP07101 528 aa4.06□□□□□ -1.76
VPS50-216ENST00000484954 FPR3P25089 353 aa4.06□□□□□ -1.76
VPS50-216ENST00000484954 KRT17Q04695 432 aa4.06□□□□□ -1.76
VPS50-216ENST00000484954 SLC10A2Q12908 348 aaPredicted RBP4.06□□□□□ -1.76
VPS50-216ENST00000484954 SLC13A2Q13183 592 aa4.06□□□□□ -1.76
VPS50-216ENST00000484954 GRM1Q13255 1194 aa4.06□□□□□ -1.76
VPS50-216ENST00000484954 PLA1AQ53H76 456 aa4.06□□□□□ -1.76
VPS50-216ENST00000484954 CEP78Q5JTW2 689 aa4.06□□□□□ -1.76
VPS50-216ENST00000484954 PRAMEF17Q5VTA0 474 aa4.06□□□□□ -1.76
VPS50-216ENST00000484954 DCAF12L1Q5VU92 463 aa4.06□□□□□ -1.76
VPS50-216ENST00000484954 LMBRD2Q68DH5 695 aaPredicted RBP4.06□□□□□ -1.76
VPS50-216ENST00000484954 APOA5Q6Q788 366 aa4.06□□□□□ -1.76
VPS50-216ENST00000484954 ZDHHC24Q6UX98 284 aa4.06□□□□□ -1.76
VPS50-216ENST00000484954 ZNF783Q6ZMS7 281 aa4.06□□□□□ -1.76
VPS50-216ENST00000484954 Q6ZWC4 215 aa4.06□□□□□ -1.76
VPS50-216ENST00000484954 C1QL2Q7Z5L3 287 aa4.06□□□□□ -1.76
VPS50-216ENST00000484954 GAS2L3Q86XJ1 694 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms