RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 B4GALT4O60513 344 aa6.34□□□□□ -1.39
UPF3A-205ENST00000479712 TSPAN15O95858 294 aa6.34□□□□□ -1.39
UPF3A-205ENST00000479712 SBK3P0C264 359 aa6.34□□□□□ -1.39
UPF3A-205ENST00000479712 STT3AP46977 705 aa6.34□□□□□ -1.39
UPF3A-205ENST00000479712 KCNJ5P48544 419 aa6.34□□□□□ -1.39
UPF3A-205ENST00000479712 EXOSC9Q06265 439 aaKnown RBP6.34□□□□□ -1.39
UPF3A-205ENST00000479712 MRPL49Q13405 166 aaKnown RBP6.34□□□□□ -1.39
UPF3A-205ENST00000479712 RIN1Q13671 783 aa6.34□□□□□ -1.39
UPF3A-205ENST00000479712 EMC10Q5UCC4 262 aa6.34□□□□□ -1.39
UPF3A-205ENST00000479712 SEM1Q6ZVN7 128 aa6.34□□□□□ -1.39
UPF3A-205ENST00000479712 SESTD1Q86VW0 696 aa6.34□□□□□ -1.39
UPF3A-205ENST00000479712 MYLK4Q86YV6 388 aaPredicted RBP6.34□□□□□ -1.39
UPF3A-205ENST00000479712 LIX1LQ8IVB5 337 aa6.34□□□□□ -1.39
UPF3A-205ENST00000479712 TMEM151BQ8IW70 566 aa6.34□□□□□ -1.39
UPF3A-205ENST00000479712 TP53I13Q8NBR0 393 aaPredicted RBP6.34□□□□□ -1.39
UPF3A-205ENST00000479712 POF1BQ8WVV4 589 aa6.34□□□□□ -1.39
UPF3A-205ENST00000479712 KBTBD7Q8WVZ9 684 aa6.34□□□□□ -1.39
UPF3A-205ENST00000479712 ARL8AQ96BM9 186 aa6.34□□□□□ -1.39
UPF3A-205ENST00000479712 ERO1AQ96HE7 468 aa6.34□□□□□ -1.39
UPF3A-205ENST00000479712 ASB2Q96Q27 587 aa6.34□□□□□ -1.39
UPF3A-205ENST00000479712 MYOCQ99972 504 aa6.34□□□□□ -1.39
UPF3A-205ENST00000479712 MRI1Q9BV20 369 aa6.34□□□□□ -1.39
UPF3A-205ENST00000479712 PACSIN1Q9BY11 444 aa6.34□□□□□ -1.39
UPF3A-205ENST00000479712 C12orf65Q9H3J6 166 aaKnown RBP6.34□□□□□ -1.39
UPF3A-205ENST00000479712 CERS4Q9HA82 394 aa6.34□□□□□ -1.39
UPF3A-205ENST00000479712 TRMT13Q9NUP7 481 aaKnown RBP6.34□□□□□ -1.39
UPF3A-205ENST00000479712 TMOD3Q9NYL9 352 aa6.34□□□□□ -1.39
UPF3A-205ENST00000479712 GPRC5BQ9NZH0 403 aa6.34□□□□□ -1.39
UPF3A-205ENST00000479712 ZDHHC8Q9ULC8 765 aa6.34□□□□□ -1.39
UPF3A-205ENST00000479712 PADI4Q9UM07 663 aa6.34□□□□□ -1.39
UPF3A-205ENST00000479712 BDP1A6H8Y1 2624 aa6.34□□□□□ -1.39
UPF3A-205ENST00000479712 POLR2AP24928 1970 aaKnown RBP6.33□□□□□ -1.4
UPF3A-205ENST00000479712 A0A1W2PRX2 142 aa6.33□□□□□ -1.4
UPF3A-205ENST00000479712 TCRBV7S2A1N4TA0A589 114 aa6.33□□□□□ -1.4
UPF3A-205ENST00000479712 PMS2P1A4D2B8 440 aa6.33□□□□□ -1.4
UPF3A-205ENST00000479712 MATN2O00339 956 aa6.33□□□□□ -1.4
UPF3A-205ENST00000479712 IL18RAPO95256 599 aa6.33□□□□□ -1.4
UPF3A-205ENST00000479712 MATN4O95460 622 aa6.33□□□□□ -1.4
UPF3A-205ENST00000479712 HDCP19113 662 aa6.33□□□□□ -1.4
UPF3A-205ENST00000479712 CRKLP46109 303 aaKnown RBP6.33□□□□□ -1.4
UPF3A-205ENST00000479712 GMPSP49915 693 aaPredicted RBP6.33□□□□□ -1.4
UPF3A-205ENST00000479712 RAC3P60763 192 aa6.33□□□□□ -1.4
UPF3A-205ENST00000479712 KIAA2012Q0VF49 1180 aa6.33□□□□□ -1.4
UPF3A-205ENST00000479712 DAG1Q14118 895 aa6.33□□□□□ -1.4
UPF3A-205ENST00000479712 KRT72Q14CN4 511 aa6.33□□□□□ -1.4
UPF3A-205ENST00000479712 C4orf46Q504U0 113 aa6.33□□□□□ -1.4
UPF3A-205ENST00000479712 FAM209BQ5JX69 171 aa6.33□□□□□ -1.4
UPF3A-205ENST00000479712 IZUMO3Q5VZ72 239 aa6.33□□□□□ -1.4
UPF3A-205ENST00000479712 CCDC33Q8N5R6 958 aa6.33□□□□□ -1.4
UPF3A-205ENST00000479712 SHCBP1Q8NEM2 672 aa6.33□□□□□ -1.4
UPF3A-205ENST00000479712 IL17RDQ8NFM7 739 aa6.33□□□□□ -1.4
UPF3A-205ENST00000479712 OR6B3Q8NGW1 331 aa6.33□□□□□ -1.4
UPF3A-205ENST00000479712 KIAA1191Q96A73 305 aa6.33□□□□□ -1.4
UPF3A-205ENST00000479712 TCF25Q9BQ70 676 aa6.33□□□□□ -1.4
UPF3A-205ENST00000479712 TRIM54Q9BYV2 358 aa6.33□□□□□ -1.4
UPF3A-205ENST00000479712 VPS11Q9H270 941 aa6.33□□□□□ -1.4
UPF3A-205ENST00000479712 AFF4Q9UHB7 1163 aaKnown RBP6.33□□□□□ -1.4
UPF3A-205ENST00000479712 CDH23Q9H251 3354 aa6.33□□□□□ -1.4
UPF3A-205ENST00000479712 KMT2BQ9UMN6 2715 aaPredicted RBP6.32□□□□□ -1.4
UPF3A-205ENST00000479712 NPIPB6E9PJ23 425 aa6.32□□□□□ -1.4
UPF3A-205ENST00000479712 PJA2O43164 708 aa6.32□□□□□ -1.4
UPF3A-205ENST00000479712 SNRPA1P09661 255 aaKnown RBP6.32□□□□□ -1.4
UPF3A-205ENST00000479712 PARP1P09874 1014 aaKnown RBP6.32□□□□□ -1.4
UPF3A-205ENST00000479712 TSHRP16473 764 aa6.32□□□□□ -1.4
UPF3A-205ENST00000479712 PHKA1P46020 1223 aa6.32□□□□□ -1.4
UPF3A-205ENST00000479712 SLURP1P55000 103 aa6.32□□□□□ -1.4
UPF3A-205ENST00000479712 JAG1P78504 1218 aa6.32□□□□□ -1.4
UPF3A-205ENST00000479712 FAM214AQ32MH5 1076 aa6.32□□□□□ -1.4
UPF3A-205ENST00000479712 DGKKQ5KSL6 1271 aa6.32□□□□□ -1.4
UPF3A-205ENST00000479712 ANO1Q5XXA6 986 aa6.32□□□□□ -1.4
UPF3A-205ENST00000479712 ZNF529Q6P280 563 aa6.32□□□□□ -1.4
UPF3A-205ENST00000479712 BORAQ6PGQ7 559 aa6.32□□□□□ -1.4
UPF3A-205ENST00000479712 ZNF783Q6ZMS7 281 aa6.32□□□□□ -1.4
UPF3A-205ENST00000479712 BHLHE22Q8NFJ8 381 aaPredicted RBP6.32□□□□□ -1.4
UPF3A-205ENST00000479712 SLC35B2Q8TB61 432 aa6.32□□□□□ -1.4
UPF3A-205ENST00000479712 ZC3H10Q96K80 434 aaKnown RBP6.32□□□□□ -1.4
UPF3A-205ENST00000479712 MSLNLQ96KJ4 702 aa6.32□□□□□ -1.4
UPF3A-205ENST00000479712 CRB3Q9BUF7 120 aa6.32□□□□□ -1.4
UPF3A-205ENST00000479712 BRD9Q9H8M2 597 aa6.32□□□□□ -1.4
UPF3A-205ENST00000479712 SACM1LQ9NTJ5 587 aa6.32□□□□□ -1.4
UPF3A-205ENST00000479712 CFAP97Q9P2B7 532 aa6.32□□□□□ -1.4
UPF3A-205ENST00000479712 SRRDQ9UH36 339 aa6.32□□□□□ -1.4
UPF3A-205ENST00000479712 LRCH1Q9Y2L9 728 aa6.32□□□□□ -1.4
UPF3A-205ENST00000479712 MED16Q9Y2X0 877 aa6.32□□□□□ -1.4
UPF3A-205ENST00000479712 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.32□□□□□ -1.4
UPF3A-205ENST00000479712 CD163L1Q9NR16 1453 aa6.32□□□□□ -1.4
UPF3A-205ENST00000479712 EPG5Q9HCE0 2579 aa6.31□□□□□ -1.4
UPF3A-205ENST00000479712 KLRG2A4D1S0 409 aaPredicted RBP6.31□□□□□ -1.4
UPF3A-205ENST00000479712 B5MCH6 92 aa6.31□□□□□ -1.4
UPF3A-205ENST00000479712 F8W8V4 182 aa6.31□□□□□ -1.4
UPF3A-205ENST00000479712 SMIM22K7EJ46 135 aa6.31□□□□□ -1.4
UPF3A-205ENST00000479712 NUAK1O60285 661 aa6.31□□□□□ -1.4
UPF3A-205ENST00000479712 B4GALT3O60512 393 aa6.31□□□□□ -1.4
UPF3A-205ENST00000479712 SLC43A1O75387 559 aa6.31□□□□□ -1.4
UPF3A-205ENST00000479712 STC2O76061 302 aa6.31□□□□□ -1.4
UPF3A-205ENST00000479712 CNOT4O95628 575 aaKnown RBP6.31□□□□□ -1.4
UPF3A-205ENST00000479712 ABCB4P21439 1286 aa6.31□□□□□ -1.4
UPF3A-205ENST00000479712 PPM1AP35813 382 aa6.31□□□□□ -1.4
UPF3A-205ENST00000479712 ARFIP2P53365 341 aa6.31□□□□□ -1.4
UPF3A-205ENST00000479712 RAP2BP61225 183 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms