RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 UXTQ9UBK9 157 aaPredicted RBP20.11■□□□□ 0.81
CCDC88B-206ENST00000473405 PAPSS2O95340 614 aaPredicted RBP20.1■□□□□ 0.81
CCDC88B-206ENST00000473405 SLFN14P0C7P3 912 aa20.1■□□□□ 0.81
CCDC88B-206ENST00000473405 ZNF268Q14587 947 aaPredicted RBP20.1■□□□□ 0.81
CCDC88B-206ENST00000473405 PPP2R5DQ14738 602 aa20.1■□□□□ 0.81
CCDC88B-206ENST00000473405 KNOP1Q1ED39 458 aaKnown RBP20.1■□□□□ 0.81
CCDC88B-206ENST00000473405 DGKKQ5KSL6 1271 aa20.1■□□□□ 0.81
CCDC88B-206ENST00000473405 C4orf50Q6ZRC1 276 aa20.1■□□□□ 0.81
CCDC88B-206ENST00000473405 PLEKHO2Q8TD55 490 aa20.1■□□□□ 0.81
CCDC88B-206ENST00000473405 FNBP1Q96RU3 617 aa20.1■□□□□ 0.81
CCDC88B-206ENST00000473405 MMS19Q96T76 1030 aa20.1■□□□□ 0.81
CCDC88B-206ENST00000473405 MRPL45Q9BRJ2 306 aaKnown RBP20.1■□□□□ 0.81
CCDC88B-206ENST00000473405 CGNQ9P2M7 1197 aaKnown RBP20.1■□□□□ 0.81
CCDC88B-206ENST00000473405 SERTAD1Q9UHV2 236 aa20.1■□□□□ 0.81
CCDC88B-206ENST00000473405 K7ESF4 209 aa20.09■□□□□ 0.81
CCDC88B-206ENST00000473405 TACC1O75410 805 aa20.09■□□□□ 0.81
CCDC88B-206ENST00000473405 PDGFRBP09619 1106 aa20.09■□□□□ 0.81
CCDC88B-206ENST00000473405 CXCL12P48061 93 aa20.09■□□□□ 0.81
CCDC88B-206ENST00000473405 NRLP54845 237 aa20.09■□□□□ 0.81
CCDC88B-206ENST00000473405 DMWDQ09019 674 aa20.09■□□□□ 0.81
CCDC88B-206ENST00000473405 RUNX3Q13761 415 aa20.09■□□□□ 0.81
CCDC88B-206ENST00000473405 CEP57L1Q8IYX8 460 aa20.09■□□□□ 0.81
CCDC88B-206ENST00000473405 KIAA0895Q8NCT3 520 aa20.09■□□□□ 0.81
CCDC88B-206ENST00000473405 RMDN1Q96DB5 314 aa20.09■□□□□ 0.81
CCDC88B-206ENST00000473405 PCED1BQ96HM7 432 aa20.09■□□□□ 0.81
CCDC88B-206ENST00000473405 SPATA17Q96L03 361 aa20.09■□□□□ 0.81
CCDC88B-206ENST00000473405 XYLT2Q9H1B5 865 aa20.09■□□□□ 0.81
CCDC88B-206ENST00000473405 EBF3Q9H4W6 596 aa20.09■□□□□ 0.81
CCDC88B-206ENST00000473405 ATG2BQ96BY7 2078 aa20.08■□□□□ 0.81
CCDC88B-206ENST00000473405 ARSAP15289 507 aa20.08■□□□□ 0.81
CCDC88B-206ENST00000473405 BDNFP23560 247 aa20.08■□□□□ 0.81
CCDC88B-206ENST00000473405 CASP4P49662 377 aa20.08■□□□□ 0.81
CCDC88B-206ENST00000473405 CYP27A1Q02318 531 aa20.08■□□□□ 0.81
CCDC88B-206ENST00000473405 STK4Q13043 487 aa20.08■□□□□ 0.81
CCDC88B-206ENST00000473405 USP4Q13107 963 aa20.08■□□□□ 0.81
CCDC88B-206ENST00000473405 MAPRE1Q15691 268 aaKnown RBP20.08■□□□□ 0.81
CCDC88B-206ENST00000473405 ZNF77Q15935 545 aa20.08■□□□□ 0.81
CCDC88B-206ENST00000473405 WDR72Q3MJ13 1102 aa20.08■□□□□ 0.81
CCDC88B-206ENST00000473405 VSTM1Q6UX27 236 aa20.08■□□□□ 0.81
CCDC88B-206ENST00000473405 MYCBPAPQ8TBZ2 947 aa20.08■□□□□ 0.81
CCDC88B-206ENST00000473405 PAGE5Q96GU1 130 aa20.08■□□□□ 0.81
CCDC88B-206ENST00000473405 CHAMP1Q96JM3 812 aa20.08■□□□□ 0.81
CCDC88B-206ENST00000473405 CYP2S1Q96SQ9 504 aa20.08■□□□□ 0.81
CCDC88B-206ENST00000473405 TRPC7Q9HCX4 862 aa20.08■□□□□ 0.81
CCDC88B-206ENST00000473405 NCDNQ9UBB6 729 aa20.08■□□□□ 0.81
CCDC88B-206ENST00000473405 MAGEC2Q9UBF1 373 aaPredicted RBP20.08■□□□□ 0.81
CCDC88B-206ENST00000473405 EML5Q05BV3 1969 aa20.08■□□□□ 0.8
CCDC88B-206ENST00000473405 C2orf78A6NCI8 922 aa20.07■□□□□ 0.8
CCDC88B-206ENST00000473405 EXOC3O60645 756 aa20.07■□□□□ 0.8
CCDC88B-206ENST00000473405 STAU1O95793 577 aaKnown RBP20.07■□□□□ 0.8
CCDC88B-206ENST00000473405 PFKFB1P16118 471 aa20.07■□□□□ 0.8
CCDC88B-206ENST00000473405 HOXC13P31276 330 aa20.07■□□□□ 0.8
CCDC88B-206ENST00000473405 MYL6P60660 151 aa20.07■□□□□ 0.8
CCDC88B-206ENST00000473405 USP46P62068 366 aa20.07■□□□□ 0.8
CCDC88B-206ENST00000473405 FAM160A1Q05DH4 1040 aa20.07■□□□□ 0.8
CCDC88B-206ENST00000473405 MDH1BQ5I0G3 518 aa20.07■□□□□ 0.8
CCDC88B-206ENST00000473405 CEP295NLQ96MC4 621 aa20.07■□□□□ 0.8
CCDC88B-206ENST00000473405 DPEP3Q9H4B8 488 aa20.07■□□□□ 0.8
CCDC88B-206ENST00000473405 TMEM30AQ9NV96 361 aa20.07■□□□□ 0.8
CCDC88B-206ENST00000473405 GCNT4Q9P109 453 aa20.07■□□□□ 0.8
CCDC88B-206ENST00000473405 ZDHHC9Q9Y397 364 aa20.07■□□□□ 0.8
CCDC88B-206ENST00000473405 TRAV19A0A0A6YYK7 116 aa20.06■□□□□ 0.8
CCDC88B-206ENST00000473405 A0A1B0GVL5 298 aa20.06■□□□□ 0.8
CCDC88B-206ENST00000473405 CKMP06732 381 aa20.06■□□□□ 0.8
CCDC88B-206ENST00000473405 USP17L7P0C7H9 530 aa20.06■□□□□ 0.8
CCDC88B-206ENST00000473405 GNL1P36915 607 aaPredicted RBP20.06■□□□□ 0.8
CCDC88B-206ENST00000473405 CACNA2D1P54289 1103 aa20.06■□□□□ 0.8
CCDC88B-206ENST00000473405 TNNC1P63316 161 aa20.06■□□□□ 0.8
CCDC88B-206ENST00000473405 CLDN10P78369 228 aa20.06■□□□□ 0.8
CCDC88B-206ENST00000473405 MTF1Q14872 753 aa20.06■□□□□ 0.8
CCDC88B-206ENST00000473405 TMEM196Q5HYL7 178 aa20.06■□□□□ 0.8
CCDC88B-206ENST00000473405 TDRD10Q5VZ19 366 aaKnown RBP20.06■□□□□ 0.8
CCDC88B-206ENST00000473405 FSTL4Q6MZW2 842 aa20.06■□□□□ 0.8
CCDC88B-206ENST00000473405 PKN3Q6P5Z2 889 aa20.06■□□□□ 0.8
CCDC88B-206ENST00000473405 SYNPOQ8N3V7 929 aa20.06■□□□□ 0.8
CCDC88B-206ENST00000473405 GOLGA5Q8TBA6 731 aa20.06■□□□□ 0.8
CCDC88B-206ENST00000473405 TMEM174Q8WUU8 243 aa20.06■□□□□ 0.8
CCDC88B-206ENST00000473405 TTLL2Q9BWV7 592 aa20.06■□□□□ 0.8
CCDC88B-206ENST00000473405 SNX25Q9H3E2 840 aa20.06■□□□□ 0.8
CCDC88B-206ENST00000473405 EXOC1Q9NV70 894 aa20.06■□□□□ 0.8
CCDC88B-206ENST00000473405 DMAC2Q9NW81 257 aa20.06■□□□□ 0.8
CCDC88B-206ENST00000473405 HPSEQ9Y251 543 aa20.06■□□□□ 0.8
CCDC88B-206ENST00000473405 SPTBN2O15020 2390 aa20.06■□□□□ 0.8
CCDC88B-206ENST00000473405 SPAG17Q6Q759 2223 aa20.06■□□□□ 0.8
CCDC88B-206ENST00000473405 CHURC1-FNTBB4DL54 471 aa20.05■□□□□ 0.8
CCDC88B-206ENST00000473405 FAM163BP0C2L3 166 aa20.05■□□□□ 0.8
CCDC88B-206ENST00000473405 CMA1P23946 247 aa20.05■□□□□ 0.8
CCDC88B-206ENST00000473405 GRIK1P39086 918 aa20.05■□□□□ 0.8
CCDC88B-206ENST00000473405 FNTBP49356 437 aa20.05■□□□□ 0.8
CCDC88B-206ENST00000473405 FOXK2Q01167 660 aa20.05■□□□□ 0.8
CCDC88B-206ENST00000473405 PDGFRLQ15198 375 aa20.05■□□□□ 0.8
CCDC88B-206ENST00000473405 KMT5BQ4FZB7 885 aa20.05■□□□□ 0.8
CCDC88B-206ENST00000473405 NAIF1Q69YI7 327 aaPredicted RBP20.05■□□□□ 0.8
CCDC88B-206ENST00000473405 CC2D1AQ6P1N0 951 aaPredicted RBP20.05■□□□□ 0.8
CCDC88B-206ENST00000473405 DENND5BQ6ZUT9 1274 aa20.05■□□□□ 0.8
CCDC88B-206ENST00000473405 ERMP1Q7Z2K6 904 aa20.05■□□□□ 0.8
CCDC88B-206ENST00000473405 ARL14EPQ8N8R7 260 aaPredicted RBP20.05■□□□□ 0.8
CCDC88B-206ENST00000473405 OR6B3Q8NGW1 331 aa20.05■□□□□ 0.8
CCDC88B-206ENST00000473405 PARD3BQ8TEW8 1205 aa20.05■□□□□ 0.8
CCDC88B-206ENST00000473405 KCTD10Q9H3F6 313 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms