RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 SIPA1L1O43166 1804 aa14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 RIPK2O43353 540 aa14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 MMP8P22894 467 aa14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 CTCFP49711 727 aaPredicted RBP14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 MYCBPAPQ8TBZ2 947 aa14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 PARK7Q99497 189 aaKnown RBP14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 SYT11Q9BT88 431 aa14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 GRHL1Q9NZI5 618 aa14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 IL1RAPL1Q9NZN1 696 aa14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 PRG3Q9Y2Y8 225 aaPredicted RBP14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 MKI67P46013 3256 aaKnown RBP14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 EIF4E1BA6NMX2 242 aaKnown RBP14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 SCAMP3O14828 347 aaKnown RBP14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 SRGAP2BP0DMP2 458 aa14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 ELNP15502 786 aa14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 ABCG1P45844 678 aa14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 SNRPFP62306 86 aaKnown RBP14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 SLMAPQ14BN4 828 aa14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 TARBP2Q15633 366 aaKnown RBP14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 KCNV1Q6PIU1 500 aa14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 CES3Q6UWW8 571 aa14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 BEST2Q8NFU1 509 aa14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 FAM81BQ96LP2 452 aa14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 SMIM10L2AP0DMW4 78 aa14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 SMIM10L2BP0DMW5 78 aa14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 TFE3P19532 575 aaPredicted RBP14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 GNL1P36915 607 aaPredicted RBP14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 PTGIRP43119 386 aa14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 SURF1Q15526 300 aa14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 IL31Q6EBC2 164 aa14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 HACE1Q8IYU2 909 aa14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 MAML3Q96JK9 1138 aa14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 SGIP1Q9BQI5 828 aa14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 UBP1Q9NZI7 540 aa14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 ZC3H4Q9UPT8 1303 aaKnown RBP14.41□□□□□ -0.1
CCDC88A-211ENST00000471947 AFF1P51825 1210 aaKnown RBP14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 RAD23BP54727 409 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 AP1B1Q10567 949 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 OVGP1Q12889 678 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 NOL9Q5SY16 702 aaKnown RBP14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 RWDD4Q6NW29 188 aaKnown RBP14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 TRIM72Q6ZMU5 477 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 FAM183BPQ6ZVS7 135 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 ILDR2Q71H61 639 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 TAOK1Q7L7X3 1001 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 UNC45BQ8IWX7 931 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 MAIP1Q8WWC4 291 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 TTC17Q96AE7 1141 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 ZMAT2Q96NC0 199 aaKnown RBP14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 PGLYRP2Q96PD5 576 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 UBXN6Q9BZV1 441 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 TMEM134Q9H6X4 195 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 SLC5A4Q9NY91 659 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 TMEM59LQ9UK28 342 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 DIS3Q9Y2L1 958 aaKnown RBP14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 BTNL10A8MVZ5 291 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 MAGEB2O15479 319 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 ADCY6O43306 1168 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 USP12O75317 370 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 THPOP40225 353 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 ASPAP45381 313 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 MAP3K7CLP57077 242 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 PMF1Q6P1K2 205 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 ZNF449Q6P9G9 518 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 C3orf62Q6ZUJ4 267 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 SIX6OS1Q8N1H7 587 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 PPP1R14CQ8TAE6 165 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 TBC1D31Q96DN5 1066 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 FGD4Q96M96 766 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 BAIAP2L1Q9UHR4 511 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 MYBL1P10243 752 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 KITP10721 976 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 SLC1A1P43005 524 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 SLC8A3P57103 927 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 DNAJC3Q13217 504 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 FAM117BQ6P1L5 589 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 KIF2BQ8N4N8 673 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 WDTC1Q8N5D0 677 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 PTPN18Q99952 460 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 ABHD16BQ9H3Z7 469 aa14.4□□□□□ -0.1
CCDC88A-211ENST00000471947 ZBTB42B2RXF5 422 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 B3GAT3O94766 335 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 SLC4A1P02730 911 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 MLH1P40692 756 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 ZBTB16Q05516 673 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 SPARCL1Q14515 664 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 E2F5Q15329 346 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 TTC31Q49AM3 519 aaPredicted RBP14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 CCDC62Q6P9F0 684 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 MICALCLQ6ZW33 695 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 TBC1D1Q86TI0 1168 aaPredicted RBP14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 PYROXD2Q8N2H3 581 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 SLC4A11Q8NBS3 891 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 OLIG1Q8TAK6 271 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 SPOCK2Q92563 424 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 TACO1Q9BSH4 297 aaKnown RBP14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 TRAIPQ9BWF2 469 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 RHOBTB2Q9BYZ6 727 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 NINJ2Q9NZG7 142 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 XPO7Q9UIA9 1087 aaKnown RBP14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms