RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 KCTD6Q8NC69 237 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 HSPH1Q92598 858 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 HPDLQ96IR7 371 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 TGS1Q96RS0 853 aaKnown RBP9.39□□□□□ -0.91
SYNE1-217ENST00000466159 RAB6CQ9H0N0 254 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 KIF9Q9HAQ2 790 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 RNF181Q9P0P0 153 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.39□□□□□ -0.91
SYNE1-217ENST00000466159 AGAP1Q9UPQ3 857 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 PIAS1O75925 651 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 MCF2P10911 925 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 GJA5P36382 358 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 CTCFP49711 727 aaPredicted RBP9.39□□□□□ -0.91
SYNE1-217ENST00000466159 WDR4P57081 412 aaKnown RBP9.39□□□□□ -0.91
SYNE1-217ENST00000466159 PKN2Q16513 984 aaKnown RBP9.39□□□□□ -0.91
SYNE1-217ENST00000466159 FAM187BQ17R55 369 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 MSS51Q4VC12 460 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 FAM133BQ5BKY9 247 aaKnown RBP9.39□□□□□ -0.91
SYNE1-217ENST00000466159 ZNF484Q5JVG2 852 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 TAPT1Q6NXT6 567 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 ARHGEF18Q6ZSZ5 1173 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 BBS12Q6ZW61 710 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 TRABD2AQ86V40 505 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 UNC45BQ8IWX7 931 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 AFG1LQ8WV93 481 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 CPT1BQ92523 772 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 MCRS1Q96EZ8 462 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 TTC25Q96NG3 672 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 KLC4Q9NSK0 619 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 NKIRAS1Q9NYS0 192 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 WDR35Q9P2L0 1181 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 SHOC2Q9UQ13 582 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 EFR3BQ9Y2G0 817 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 USP15Q9Y4E8 981 aaPredicted RBP9.39□□□□□ -0.91
SYNE1-217ENST00000466159 FARP1Q9Y4F1 1045 aaPredicted RBP9.39□□□□□ -0.91
SYNE1-217ENST00000466159 TRIP11Q15643 1979 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 TCRBV7S3A2A0A539 114 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 ASB14A6NK59 587 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 CYP3A5P20815 502 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 FOXN2P32314 431 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 RPL22P35268 128 aaKnown RBP9.38□□□□□ -0.91
SYNE1-217ENST00000466159 GPX6P59796 221 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 TNFAIP2Q03169 654 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 MMRN1Q13201 1228 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 TAZQ16635 292 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 HIF1AQ16665 826 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 FNBP1LQ5T0N5 605 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 FAM102AQ5T9C2 384 aaPredicted RBP9.38□□□□□ -0.91
SYNE1-217ENST00000466159 TRNP1Q6NT89 227 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 MAMDC4Q6UXC1 1216 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 CENPUQ71F23 418 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 FASTKD5Q7L8L6 764 aaKnown RBP9.38□□□□□ -0.91
SYNE1-217ENST00000466159 RFX6Q8HWS3 928 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 FUKQ8N0W3 1084 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 RIBC1Q8N443 379 aaPredicted RBP9.38□□□□□ -0.91
SYNE1-217ENST00000466159 LINC01465Q8N7H1 131 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 PIWIL1Q96J94 861 aaKnown RBP9.38□□□□□ -0.91
SYNE1-217ENST00000466159 PEBP4Q96S96 227 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 PAIP2Q9BPZ3 127 aaKnown RBP9.38□□□□□ -0.91
SYNE1-217ENST00000466159 ADPGKQ9BRR6 497 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 CALN1Q9BXU9 219 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 CXCL16Q9H2A7 254 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 ASB7Q9H672 318 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.38□□□□□ -0.91
SYNE1-217ENST00000466159 USP18Q9UMW8 372 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 ACTL7BQ9Y614 415 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 FAM47DPA6NHR8 397 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 GRAP2O75791 330 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 RNF8O76064 485 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 TRUB2O95900 331 aaKnown RBP9.38□□□□□ -0.91
SYNE1-217ENST00000466159 KRT15P19012 456 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 SSTR1P30872 391 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 ATICP31939 592 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 GABRB2P47870 512 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 NDST1P52848 882 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 GSCP56915 257 aaPredicted RBP9.38□□□□□ -0.91
SYNE1-217ENST00000466159 LAMC2Q13753 1193 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 TMEM132DQ14C87 1099 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 CGB2Q6NT52 195 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 SUGP1Q8IWZ8 645 aaKnown RBP9.38□□□□□ -0.91
SYNE1-217ENST00000466159 C4orf33Q8N1A6 199 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 C12orf29Q8N999 325 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 FAM71DQ8N9W8 422 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 CMASQ8NFW8 434 aaPredicted RBP9.38□□□□□ -0.91
SYNE1-217ENST00000466159 NLRP7Q8WX94 980 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 RSAD2Q8WXG1 361 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 MAGEB18Q96M61 343 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 SLC12A4Q9UP95 1085 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 CITO14578 2027 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 CLUHO75153 1309 aa9.38□□□□□ -0.91
SYNE1-217ENST00000466159 A0A1W2PPM1 405 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 DNAJC8O75937 253 aaPredicted RBP9.37□□□□□ -0.91
SYNE1-217ENST00000466159 VDRP11473 427 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 TAC1P20366 129 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 ADCYAP1R1P41586 468 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 POU5F1BQ06416 359 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 XRCC4Q13426 336 aa9.37□□□□□ -0.91
SYNE1-217ENST00000466159 EFTUD2Q15029 972 aaKnown RBP eCLIP9.37□□□□□ -0.91
SYNE1-217ENST00000466159 C15orf59Q2T9L4 293 aaPredicted RBP9.37□□□□□ -0.91
SYNE1-217ENST00000466159 ICE2Q659A1 982 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms