RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 ICAM3P32942 547 aa17.21■□□□□ 0.35
CLCNKA-203ENST00000439316 RFC5P40937 340 aa17.21■□□□□ 0.35
CLCNKA-203ENST00000439316 ZPBP2Q6X784 338 aa17.21■□□□□ 0.35
CLCNKA-203ENST00000439316 MIEF2Q96C03 454 aa17.21■□□□□ 0.35
CLCNKA-203ENST00000439316 DHRS4Q9BTZ2 278 aa17.21■□□□□ 0.35
CLCNKA-203ENST00000439316 FRMD8P1Q9BZ68 369 aaPredicted RBP17.21■□□□□ 0.35
CLCNKA-203ENST00000439316 CISHQ9NSE2 258 aa17.21■□□□□ 0.35
CLCNKA-203ENST00000439316 RABGEF1Q9UJ41 708 aa17.21■□□□□ 0.35
CLCNKA-203ENST00000439316 SLC45A1Q9Y2W3 748 aa17.21■□□□□ 0.35
CLCNKA-203ENST00000439316 MCM3APO60318 1980 aa17.21■□□□□ 0.35
CLCNKA-203ENST00000439316 IGKV6D-21A0A0A0MT36 114 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 IFNB1P01574 187 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 FGFR1P11362 822 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 ALDH3A1P30838 453 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 TNFSF9P41273 254 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 CCNG1P51959 295 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 MYL6P60660 151 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 SLC25A11Q02978 314 aaKnown RBP17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 ZC3H12AQ5D1E8 599 aaKnown RBP17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 HHATQ5VTY9 493 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 ANKRD23Q86SG2 305 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 ANKMY2Q8IV38 441 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 PPIL6Q8IXY8 311 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 ATP11CQ8NB49 1132 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 CPT1BQ92523 772 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 ZNF570Q96NI8 536 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 PTPN18Q99952 460 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 MTMR12Q9C0I1 747 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 DONSONQ9NYP3 566 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 ZMYND8Q9ULU4 1186 aaPredicted RBP17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 KIF1CO43896 1103 aaKnown RBP17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 DIAPH2O60879 1101 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 TARSP26639 723 aaKnown RBP17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 PHBP35232 272 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 CTCFP49711 727 aaPredicted RBP17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 ARL4CP56559 192 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 PLCB3Q01970 1234 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 KCTD2Q14681 263 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 TARBP2Q15633 366 aaKnown RBP17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 TAZQ16635 292 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 CYP4A22Q5TCH4 519 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 ANKRD22Q5VYY1 191 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 SMYD5Q6GMV2 418 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 LVRNQ6Q4G3 990 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 OTOAQ7RTW8 1153 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 NAT8LQ8N9F0 302 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 MZB1Q8WU39 189 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 TFAP2BQ92481 460 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 ZNF75CPQ92670 426 aaPredicted RBP17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 MMP19Q99542 508 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 WDR83Q9BRX9 315 aaKnown RBP17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 MROH8Q9H579 483 aa17.2■□□□□ 0.34
CLCNKA-203ENST00000439316 TTLL13PA6NNM8 815 aa17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 E7ESA3 106 aa17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 GOLGA8SH3BPF8 625 aa17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 GOLGA8MH3BSY2 632 aa17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 ATP2A2P16615 1042 aaKnown RBP17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 GDF10P55107 478 aa17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 OTUD4Q01804 1114 aaKnown RBP17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 GAD2Q05329 585 aa17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 EFTUD2Q15029 972 aaKnown RBP eCLIP17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 ADGRD1Q6QNK2 874 aa17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 BBS12Q6ZW61 710 aa17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 GPRC5AQ8NFJ5 357 aa17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 ACTL9Q8TC94 416 aa17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 GTF3C2Q8WUA4 911 aaPredicted RBP17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 ACSS3Q9H6R3 686 aa17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 STRIP2Q9ULQ0 834 aa17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 T-ENOLP0DO92 83 aa17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 KRT4P19013 534 aa17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 EDNRBP24530 442 aa17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 TFDP1Q14186 410 aa17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 SGSM1Q2NKQ1 1148 aa17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 KLHL38Q2WGJ6 581 aa17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 MSS51Q4VC12 460 aa17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 ZNF394Q53GI3 561 aa17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 FNBP1LQ5T0N5 605 aa17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 ARFGAP1Q8N6T3 406 aa17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 TTC13Q8NBP0 860 aa17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 ZNF398Q8TD17 642 aa17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 PYROXD1Q8WU10 500 aa17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 SLC7A6OSQ96CW6 309 aaPredicted RBP17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 MRRFQ96E11 262 aaKnown RBP17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 SLC5A4Q9NY91 659 aa17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 HAO1Q9UJM8 370 aa17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 CEP83Q9Y592 693 aa17.19■□□□□ 0.34
CLCNKA-203ENST00000439316 C2CD2LO14523 706 aa17.18■□□□□ 0.34
CLCNKA-203ENST00000439316 TRAFD1O14545 582 aaPredicted RBP17.18■□□□□ 0.34
CLCNKA-203ENST00000439316 LRCH4O75427 683 aa17.18■□□□□ 0.34
CLCNKA-203ENST00000439316 TOM1L1O75674 476 aa17.18■□□□□ 0.34
CLCNKA-203ENST00000439316 PSMA2P25787 234 aa17.18■□□□□ 0.34
CLCNKA-203ENST00000439316 SSTR1P30872 391 aa17.18■□□□□ 0.34
CLCNKA-203ENST00000439316 ZNF157P51786 506 aaPredicted RBP17.18■□□□□ 0.34
CLCNKA-203ENST00000439316 PTPN20Q4JDL3 420 aa17.18■□□□□ 0.34
CLCNKA-203ENST00000439316 SLC45A4Q5BKX6 768 aa17.18■□□□□ 0.34
CLCNKA-203ENST00000439316 SHCBP1Q8NEM2 672 aa17.18■□□□□ 0.34
CLCNKA-203ENST00000439316 FNIP1Q8TF40 1166 aa17.18■□□□□ 0.34
CLCNKA-203ENST00000439316 FGD4Q96M96 766 aa17.18■□□□□ 0.34
CLCNKA-203ENST00000439316 PCYT2Q99447 389 aa17.18■□□□□ 0.34
CLCNKA-203ENST00000439316 PAFAH2Q99487 392 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms