RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 PWP1Q13610 501 aa17.84■□□□□ 0.45
PTPRF-209ENST00000438120 GIT2Q14161 759 aa17.84■□□□□ 0.45
PTPRF-209ENST00000438120 CARNMT1Q8N4J0 409 aa17.84■□□□□ 0.45
PTPRF-209ENST00000438120 EPS8L3Q8TE67 593 aaKnown RBP17.84■□□□□ 0.45
PTPRF-209ENST00000438120 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.84■□□□□ 0.453e-7■■■■■ 66.9
PTPRF-209ENST00000438120 TMEM169Q96HH4 297 aa17.84■□□□□ 0.45
PTPRF-209ENST00000438120 ZNF556Q9HAH1 456 aa17.84■□□□□ 0.45
PTPRF-209ENST00000438120 WWOXQ9NZC7 414 aa17.84■□□□□ 0.45
PTPRF-209ENST00000438120 GTF3C4Q9UKN8 822 aa17.84■□□□□ 0.45
PTPRF-209ENST00000438120 POLR1AO95602 1720 aaPredicted RBP17.84■□□□□ 0.45
PTPRF-209ENST00000438120 ASS1P00966 412 aaKnown RBP17.84■□□□□ 0.45
PTPRF-209ENST00000438120 MBL2P11226 248 aaPredicted RBP17.84■□□□□ 0.45
PTPRF-209ENST00000438120 TRIP10Q15642 601 aa17.84■□□□□ 0.45
PTPRF-209ENST00000438120 ARID3BQ8IVW6 561 aaPredicted RBP17.84■□□□□ 0.45
PTPRF-209ENST00000438120 PNKPQ96T60 521 aa17.84■□□□□ 0.45
PTPRF-209ENST00000438120 PSD3Q9NYI0 1048 aa17.84■□□□□ 0.45
PTPRF-209ENST00000438120 CPA4Q9UI42 421 aa17.84■□□□□ 0.45
PTPRF-209ENST00000438120 HSD17B3P37058 310 aa17.84■□□□□ 0.45
PTPRF-209ENST00000438120 BACE1P56817 501 aa17.84■□□□□ 0.45
PTPRF-209ENST00000438120 MPZL3Q6UWV2 235 aa17.84■□□□□ 0.45
PTPRF-209ENST00000438120 FBXO32Q969P5 355 aa17.84■□□□□ 0.45
PTPRF-209ENST00000438120 CPS1P31327 1500 aa17.84■□□□□ 0.45
PTPRF-209ENST00000438120 RGS2P41220 211 aa17.83■□□□□ 0.45
PTPRF-209ENST00000438120 GLRBP48167 497 aa17.83■□□□□ 0.45
PTPRF-209ENST00000438120 PTPAQ15257 358 aa17.83■□□□□ 0.45
PTPRF-209ENST00000438120 BOLA3Q53S33 107 aa17.83■□□□□ 0.45
PTPRF-209ENST00000438120 RDM1Q8NG50 284 aa17.83■□□□□ 0.45
PTPRF-209ENST00000438120 CACNA2D2Q9NY47 1150 aa17.83■□□□□ 0.45
PTPRF-209ENST00000438120 LZTS1Q9Y250 596 aa17.83■□□□□ 0.45
PTPRF-209ENST00000438120 SPAG6O75602 509 aa17.83■□□□□ 0.45
PTPRF-209ENST00000438120 HSPA1AP0DMV8 641 aaKnown RBP17.83■□□□□ 0.45
PTPRF-209ENST00000438120 HSPA1BP0DMV9 641 aaKnown RBP17.83■□□□□ 0.45
PTPRF-209ENST00000438120 NME5P56597 212 aa17.83■□□□□ 0.45
PTPRF-209ENST00000438120 NBPF12Q5TAG4 269 aaPredicted RBP17.83■□□□□ 0.45
PTPRF-209ENST00000438120 FAM172AQ8WUF8 416 aa17.83■□□□□ 0.45
PTPRF-209ENST00000438120 KCNK16Q96T55 309 aa17.83■□□□□ 0.45
PTPRF-209ENST00000438120 NEXMIFQ5QGS0 1516 aa17.83■□□□□ 0.45
PTPRF-209ENST00000438120 PXDNLA1KZ92 1463 aa17.83■□□□□ 0.45
PTPRF-209ENST00000438120 SPTLC1O15269 473 aa17.83■□□□□ 0.44
PTPRF-209ENST00000438120 CYP11B1P15538 503 aa17.83■□□□□ 0.44
PTPRF-209ENST00000438120 ARHGAP15Q53QZ3 475 aa17.83■□□□□ 0.44
PTPRF-209ENST00000438120 PLEKHH3Q7Z736 793 aa17.83■□□□□ 0.44
PTPRF-209ENST00000438120 ADGRF2Q8IZF7 708 aa17.83■□□□□ 0.44
PTPRF-209ENST00000438120 SYN2Q92777 582 aaPredicted RBP17.83■□□□□ 0.44
PTPRF-209ENST00000438120 COLEC11Q9BWP8 271 aa17.83■□□□□ 0.44
PTPRF-209ENST00000438120 SEMA6BQ9H3T3 888 aa17.83■□□□□ 0.44
PTPRF-209ENST00000438120 C6orf203Q9P0P8 240 aaPredicted RBP17.83■□□□□ 0.44
PTPRF-209ENST00000438120 ZNF229Q9UJW7 825 aa17.83■□□□□ 0.44
PTPRF-209ENST00000438120 KLHL2O95198 593 aa17.83■□□□□ 0.44
PTPRF-209ENST00000438120 SLC11A2P49281 568 aa17.83■□□□□ 0.44
PTPRF-209ENST00000438120 TOB1P50616 345 aaPredicted RBP17.83■□□□□ 0.44
PTPRF-209ENST00000438120 EMC1Q8N766 993 aa17.83■□□□□ 0.44
PTPRF-209ENST00000438120 CATSPER1Q8NEC5 780 aa17.83■□□□□ 0.44
PTPRF-209ENST00000438120 OLFM3Q96PB7 478 aa17.83■□□□□ 0.44
PTPRF-209ENST00000438120 MTO1Q9Y2Z2 717 aaKnown RBP17.83■□□□□ 0.44
PTPRF-209ENST00000438120 CEP152O94986 1710 aa17.83■□□□□ 0.44
PTPRF-209ENST00000438120 PBLDP30039 288 aaPredicted RBP17.83■□□□□ 0.44
PTPRF-209ENST00000438120 FBXO36Q8NEA4 188 aa17.83■□□□□ 0.44
PTPRF-209ENST00000438120 SMAD5Q99717 465 aaKnown RBP17.83■□□□□ 0.44
PTPRF-209ENST00000438120 GPR182O15218 404 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 GYS1P13807 737 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 RFX3P48380 749 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 MED21Q13503 144 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 MTFR1Q15390 333 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 SLC47A2Q86VL8 602 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 HORMAD1Q86X24 394 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 TTLL13PA6NNM8 815 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 TBC1D4O60343 1298 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 SUPT7LO94864 414 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 EFEMP1Q12805 493 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 FAM131BQ86XD5 332 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 CMTM5Q96DZ9 223 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 ROPN1BQ9BZX4 212 aaPredicted RBP17.82■□□□□ 0.44
PTPRF-209ENST00000438120 ROPN1Q9HAT0 212 aaPredicted RBP17.82■□□□□ 0.44
PTPRF-209ENST00000438120 MRPL42Q9Y6G3 142 aaKnown RBP17.82■□□□□ 0.44
PTPRF-209ENST00000438120 F5H5T6 163 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 ANXA9O76027 345 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 NAMPTP43490 491 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 PLOD1Q02809 727 aaPredicted RBP17.82■□□□□ 0.44
PTPRF-209ENST00000438120 C17orf75Q9HAS0 396 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 CASTOR2A6NHX0 329 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 MAP3K10Q02779 954 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 SLC20A1Q8WUM9 679 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 HES6Q96HZ4 224 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 SPATA16Q9BXB7 569 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 CHST12Q9NRB3 414 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 TRMT6Q9UJA5 497 aaKnown RBP17.82■□□□□ 0.44
PTPRF-209ENST00000438120 DTNAQ9Y4J8 743 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 A0A087WZ62 844 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 TPST1O60507 370 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 TRIM16O95361 564 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 WEE1P30291 646 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 CENPAP49450 140 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 CAPRIN2Q6IMN6 1127 aaKnown RBP17.82■□□□□ 0.44
PTPRF-209ENST00000438120 AGGF1Q8N302 714 aaeCLIP17.82■□□□□ 0.44
PTPRF-209ENST00000438120 STX19Q8N4C7 294 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 PLEKHA8Q96JA3 519 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 VPS50Q96JG6 964 aa17.82■□□□□ 0.44
PTPRF-209ENST00000438120 FDXACB1Q9BRP7 624 aaPredicted RBP17.82■□□□□ 0.44
PTPRF-209ENST00000438120 TIMM13Q9Y5L4 95 aaPredicted RBP17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms