RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 GALNT6Q8NCL4 622 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 REPS2Q8NFH8 660 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 URGCPQ8TCY9 931 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 DTX3LQ8TDB6 740 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 C12orf4Q9NQ89 552 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 XPNPEP3Q9NQH7 507 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 ADAMTS5Q9UNA0 930 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 GDAQ9Y2T3 454 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 CARNS1A5YM72 827 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 PCP4L1A6NKN8 68 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 NOL3O60936 208 aaKnown RBP10.24□□□□□ -0.77
USP54-205ENST00000424265 IL18RAPO95256 599 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 RARAP10276 462 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 IFNA8P32881 189 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 CDK17Q00537 523 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 TBX2Q13207 712 aaPredicted RBP10.24□□□□□ -0.77
USP54-205ENST00000424265 FSCN1Q16658 493 aaKnown RBP10.24□□□□□ -0.77
USP54-205ENST00000424265 EFCAB12Q6NXP0 572 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 ENOSF1Q7L5Y1 443 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 CACTIN-AS1Q8N1I8 211 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 OR2W6PQ8NHA6 318 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 PPTC7Q8NI37 304 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 MDM1Q8TC05 714 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 IFT122Q9HBG6 1241 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 PLGRKTQ9HBL7 147 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 PARP2Q9UGN5 583 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 H0YC42 278 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 ARL1P40616 181 aaPredicted RBP10.24□□□□□ -0.77
USP54-205ENST00000424265 TPD52P55327 224 aaPredicted RBP10.24□□□□□ -0.77
USP54-205ENST00000424265 JAG1P78504 1218 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 METTL21CQ5VZV1 264 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 METTL23Q86XA0 190 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 CHCHD4Q8N4Q1 142 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 TOR1AIP2Q8NFQ8 470 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 BEST2Q8NFU1 509 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 PPP1R14CQ8TAE6 165 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 ZNF184Q99676 751 aaPredicted RBP10.24□□□□□ -0.77
USP54-205ENST00000424265 UQCC2Q9BRT2 126 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 COMMD8Q9NX08 183 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 NKIRAS1Q9NYS0 192 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 DOLKQ9UPQ8 538 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 GIT1Q9Y2X7 761 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 GOLGA8JA6NMD2 632 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 DCTN3O75935 186 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 SLITRK3O94933 977 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 LYNP07948 512 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 DLATP10515 647 aaKnown RBP10.24□□□□□ -0.77
USP54-205ENST00000424265 CDH3P22223 829 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 ATP5DP30049 168 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 PAPD7Q5XG87 772 aaKnown RBP10.24□□□□□ -0.77
USP54-205ENST00000424265 RDH13Q8NBN7 331 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 HSPBAP1Q96EW2 488 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 STK33Q9BYT3 514 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 KLHL25Q9H0H3 589 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 GIMAP4Q9NUV9 329 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 DMGDHQ9UI17 866 aaKnown RBP10.24□□□□□ -0.77
USP54-205ENST00000424265 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.24□□□□□ -0.77
USP54-205ENST00000424265 ATP8B3O60423 1300 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 CAPN9O14815 690 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 AXLP30530 894 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 STX2P32856 288 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 S100A5P33763 92 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 PPP2R2DQ66LE6 453 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 FOXR2Q6PJQ5 311 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 ANKRD42Q8N9B4 389 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 HAS1Q92839 578 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 C8orf48Q96LL4 319 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 RXFP1Q9HBX9 757 aa10.24□□□□□ -0.77
USP54-205ENST00000424265 DCDC2CA8MYV0 355 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 O00370 1275 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 TSPAN1O60635 241 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 GHRHRQ02643 423 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 KLHL30Q0D2K2 578 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 TMEM63BQ5T3F8 832 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 NXNQ6DKJ4 435 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 DGCR14Q96DF8 476 aaKnown RBP10.23□□□□□ -0.77
USP54-205ENST00000424265 FERMT1Q9BQL6 677 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 AGO2Q9UKV8 859 aaKnown RBP10.23□□□□□ -0.77
USP54-205ENST00000424265 ATP11BQ9Y2G3 1177 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 NRCAMQ92823 1304 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 CARSP49589 748 aaKnown RBP10.23□□□□□ -0.77
USP54-205ENST00000424265 RARRES1P49788 294 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 GRB14Q14449 540 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 FLCNQ8NFG4 579 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 DACT3Q96B18 629 aaPredicted RBP10.23□□□□□ -0.77
USP54-205ENST00000424265 INIPQ9NRY2 104 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 ABHD10Q9NUJ1 306 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 TMCC3Q9ULS5 477 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 AGAP1Q9UPQ3 857 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 A0A1B0GUL6 1792 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 RASA4BC9J798 803 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 MAP3K13O43283 966 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 RASA4O43374 803 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 CHEK2O96017 543 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 ITGB5P18084 799 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 GARTP22102 1010 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 VARSP26640 1264 aaKnown RBP10.23□□□□□ -0.77
USP54-205ENST00000424265 CXCR5P32302 372 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 SERPINB6P35237 376 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 PSEN2P49810 448 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms