RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 TMEM259Q4ZIN3 620 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 ACBD5Q5T8D3 534 aaPredicted RBP11.19□□□□□ -0.62
USP54-204ENST00000422491 CDHR3Q6ZTQ4 885 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 SV2AQ7L0J3 742 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 ENOSF1Q7L5Y1 443 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 PPIL6Q8IXY8 311 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 HAUS1Q96CS2 278 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 RBM17Q96I25 401 aaKnown RBP11.19□□□□□ -0.62
USP54-204ENST00000422491 DNAJC1Q96KC8 554 aaKnown RBP11.19□□□□□ -0.62
USP54-204ENST00000422491 AGBL1Q96MI9 1066 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 WDR11Q9BZH6 1224 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 WWP1Q9H0M0 922 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 MRPL47Q9HD33 250 aaKnown RBP11.19□□□□□ -0.62
USP54-204ENST00000422491 hCG_1818297A0A087WSY0 165 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 PRR5-ARHGAP8B1AHC4 643 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 PEX2P28328 305 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 CHN2P52757 468 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 ARHGAP8P85298 464 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 BST1Q10588 318 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 EFHC1Q5JVL4 640 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 LIN9Q5TKA1 542 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 FBXL19Q6PCT2 694 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 SPOCD1Q6ZMY3 1216 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 ARID3BQ8IVW6 561 aaPredicted RBP11.19□□□□□ -0.62
USP54-204ENST00000422491 SLC35B2Q8TB61 432 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 POMGNT1Q8WZA1 660 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 SOX13Q9UN79 622 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 PCDHGA4Q9Y5G9 962 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 PGM3O95394 542 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 HLA-DOAP06340 250 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 SETSIPP0DME0 302 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 ARP10275 920 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 ATP2B4P23634 1241 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 TPP2P29144 1249 aaPredicted RBP11.18□□□□□ -0.62
USP54-204ENST00000422491 PTPN7P35236 360 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 NOMO3P69849 1222 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 CDK18Q07002 472 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 FAAP100Q0VG06 881 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 TBL3Q12788 808 aaKnown RBP11.18□□□□□ -0.62
USP54-204ENST00000422491 MTM1Q13496 603 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 ANKRD20A4Q4UJ75 823 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 PIP4K2CQ8TBX8 421 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 SLC44A1Q8WWI5 657 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 ZNF577Q9BSK1 485 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 MECRQ9BV79 373 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 USP29Q9HBJ7 922 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 RHBDL2Q9NX52 303 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 ZNRF3Q9ULT6 936 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 IVNS1ABPQ9Y6Y0 642 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 A0A0J9YVX5 310 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 TCRBV7S3A2A0A539 114 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 MEI4A8MW99 385 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 PFDN1O60925 122 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 TMEM63AO94886 807 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 TFAP2AP05549 437 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 TSHRP16473 764 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 DESP17661 470 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 GDF10P55107 478 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 CCNIQ14094 377 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 HIC1Q14526 733 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 MMEL1Q495T6 779 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 CEP55Q53EZ4 464 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 TEX44Q53QW1 395 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 MAP3K21Q5TCX8 1036 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 PALM2Q8IXS6 379 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 TMC2Q8TDI7 906 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 GDPD5Q8WTR4 605 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 IRGQQ8WZA9 623 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 VCPIP1Q96JH7 1222 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 SRPK1Q96SB4 655 aaKnown RBP11.18□□□□□ -0.62
USP54-204ENST00000422491 GINM1Q9NU53 330 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 GGA1Q9UJY5 639 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 SCINQ9Y6U3 715 aa11.18□□□□□ -0.62
USP54-204ENST00000422491 C15orf38-AP3S2A0A0A6YYH1 394 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 I3L4J1 428 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 SLC16A4O15374 487 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 CCNT2O60583 730 aaKnown RBP11.17□□□□□ -0.62
USP54-204ENST00000422491 CSDE1O75534 798 aaKnown RBP11.17□□□□□ -0.62
USP54-204ENST00000422491 NDUFB10O96000 172 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 SERPINA6P08185 405 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 AOC1P19801 751 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 GTF2H1P32780 548 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 ECE1P42892 770 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 ALDH18A1P54886 795 aaKnown RBP11.17□□□□□ -0.62
USP54-204ENST00000422491 AQP5P55064 265 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 RPL7AP62424 266 aaKnown RBP11.17□□□□□ -0.62
USP54-204ENST00000422491 UBXN2AP68543 259 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 ZNF252P-AS1Q0IIN9 211 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 UBAP2LQ14157 1087 aaKnown RBP11.17□□□□□ -0.62
USP54-204ENST00000422491 TXNRD3NBQ6F5E7 133 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 KLC3Q6P597 504 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 B3GNT6Q6ZMB0 384 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 ARPINQ7Z6K5 226 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 PHF13Q86YI8 300 aaPredicted RBP11.17□□□□□ -0.62
USP54-204ENST00000422491 PASD1Q8IV76 773 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 FEZF2Q8TBJ5 459 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 GMCL1Q96IK5 515 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 MFSD14AQ96MC6 490 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 ACAP3Q96P50 834 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 SENP7Q9BQF6 1050 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms