RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 ASAP1Q9ULH1 1129 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 SNX8Q9Y5X2 465 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 MINDY2Q8NBR6 621 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 AP3S1Q92572 193 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 GAL3ST3Q96A11 431 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 SENP7Q9BQF6 1050 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 GNG14A0A1W2PPG7 69 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 TMEM120BA0PK00 339 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 ENO2P09104 434 aaPredicted RBP13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 GCLMP48507 274 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 NACC2Q96BF6 587 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 PAIP1Q9H074 479 aaKnown RBP13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 TPRKBQ9Y3C4 175 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 MYO5CQ9NQX4 1742 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 MGAT4DA6NG13 374 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 ATG7O95352 703 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 AKR1B1P15121 316 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 PRMT9Q6P2P2 845 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 LRRC6Q86X45 466 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 SLC44A2Q8IWA5 706 aaPredicted RBP13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 CENPIQ92674 756 aaPredicted RBP13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 MAPRE3Q9UPY8 281 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 PNMA6FA0A0J9YX94 578 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 CAMK2GQ13555 558 aaPredicted RBP13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 FAM98BQ52LJ0 330 aaKnown RBP13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 DCLRE1BQ9H816 532 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 RTN2O75298 545 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 SNRPAP09012 282 aaKnown RBP13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 S100A2P29034 98 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 LRPAP1P30533 357 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 IFNLR1Q8IU57 520 aaPredicted RBP13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 RASGRP4Q8TDF6 673 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 AGAP3Q96P47 875 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 KANSL2Q9H9L4 492 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 C12orf4Q9NQ89 552 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 KCNH2Q12809 1159 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 PCSK7Q16549 785 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 C3orf62Q6ZUJ4 267 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 CLHC1Q8NHS4 586 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 GPR63Q9BZJ6 419 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 GSTK1Q9Y2Q3 226 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 POTECB2RU33 542 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 VAV1P15498 845 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 EPB41L4AQ9HCS5 686 aaPredicted RBP13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 LRRC14BA6NHZ5 514 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 PRKAR2AP13861 404 aaKnown RBP13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 DGKDQ16760 1214 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 TTLL9Q3SXZ7 439 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 COLGALT2Q8IYK4 626 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 TSPYL6Q8N831 410 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 MRPL4Q9BYD3 311 aaKnown RBP13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 EPB41L4BQ9H329 900 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 PIK3C2GO75747 1445 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 RAB6BQ9NRW1 208 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 TLR7Q9NYK1 1049 aaKnown RBP13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 CCDC189A1A4V9 331 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 NCAM1P13591 858 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 C4orf33Q8N1A6 199 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 MIEF1Q9NQG6 463 aa13.8□□□□□ -0.2
CCDC88A-204ENST00000413716 BCLAF3A2AJT9 711 aaKnown RBP13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 SKAP2O75563 359 aaPredicted RBP13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 DNAJC3Q13217 504 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 ZBTB49Q6ZSB9 765 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 ULK2Q8IYT8 1036 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 ARL10Q8N8L6 244 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 KLHL28Q9NXS3 571 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 TRMT6Q9UJA5 497 aaKnown RBP13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 ASB14A6NK59 587 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 STX16-NPEPL1H3BU86 382 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 STX16O14662 325 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 NCK2O43639 380 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 ATP6AP1LQ52LC2 224 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 RBMXL2O75526 392 aaKnown RBP13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 THRAP10827 490 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 TFE3P19532 575 aaPredicted RBP13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 ITIH2P19823 946 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 CALB2P22676 271 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 CCDC153Q494R4 210 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 LRRC17Q8N6Y2 441 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 E2F7Q96AV8 911 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 MED15Q96RN5 788 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 C2orf40Q9H1Z8 148 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 CIDEBQ9UHD4 219 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 DBR1Q9UK59 544 aaKnown RBP13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 RCOR1Q9UKL0 485 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 SLC39A10Q9ULF5 831 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 LAMC3Q9Y6N6 1575 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 LSM1O15116 133 aaKnown RBP13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 UQCRBP14927 111 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 CCNG1P51959 295 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 PIGHQ14442 188 aaPredicted RBP13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 SWI5Q1ZZU3 235 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 MIGA2Q7L4E1 593 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 CAB39LQ9H9S4 337 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 TPD52L2O43399 206 aaKnown RBP13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 PRKAR1AP10644 381 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 DRAP1Q14919 205 aaPredicted RBP13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 POLNQ7Z5Q5 900 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 NEK6Q9HC98 313 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 AMACRQ9UHK6 382 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms