RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 STAM2O75886 525 aa21.63■■□□□ 1.05
CLK3-202ENST00000395066 TPBGLP0DKB5 382 aa21.63■■□□□ 1.05
CLK3-202ENST00000395066 PEX19P40855 299 aa21.63■■□□□ 1.05
CLK3-202ENST00000395066 GEMIN4P57678 1058 aaKnown RBP21.63■■□□□ 1.05
CLK3-202ENST00000395066 TRPC3Q13507 836 aa21.63■■□□□ 1.05
CLK3-202ENST00000395066 RAB6CQ53S08 254 aa21.63■■□□□ 1.05
CLK3-202ENST00000395066 LRRC38Q5VT99 294 aa21.63■■□□□ 1.05
CLK3-202ENST00000395066 CEP128Q6ZU80 1094 aa21.63■■□□□ 1.05
CLK3-202ENST00000395066 FAM71DQ8N9W8 422 aa21.63■■□□□ 1.05
CLK3-202ENST00000395066 SLC7A6OSQ96CW6 309 aaPredicted RBP21.63■■□□□ 1.05
CLK3-202ENST00000395066 PAFAH2Q99487 392 aa21.63■■□□□ 1.05
CLK3-202ENST00000395066 OSBPL1AQ9BXW6 950 aa21.63■■□□□ 1.05
CLK3-202ENST00000395066 RAB6CQ9H0N0 254 aa21.63■■□□□ 1.05
CLK3-202ENST00000395066 SMG5Q9UPR3 1016 aaKnown RBP21.63■■□□□ 1.05
CLK3-202ENST00000395066 SPDYE16A6NNV3 312 aaPredicted RBP21.62■■□□□ 1.05
CLK3-202ENST00000395066 KRT19P08727 400 aa21.62■■□□□ 1.05
CLK3-202ENST00000395066 GM2AP17900 193 aa21.62■■□□□ 1.05
CLK3-202ENST00000395066 ASPAP45381 313 aa21.62■■□□□ 1.05
CLK3-202ENST00000395066 ZNF699Q32M78 642 aa21.62■■□□□ 1.05
CLK3-202ENST00000395066 LONP2Q86WA8 852 aa21.62■■□□□ 1.05
CLK3-202ENST00000395066 WDR49Q8IV35 697 aa21.62■■□□□ 1.05
CLK3-202ENST00000395066 TMEM192Q8IY95 271 aa21.62■■□□□ 1.05
CLK3-202ENST00000395066 HSPH1Q92598 858 aa21.62■■□□□ 1.05
CLK3-202ENST00000395066 TBC1D10AQ9BXI6 508 aa21.62■■□□□ 1.05
CLK3-202ENST00000395066 ZFATQ9P243 1243 aa21.62■■□□□ 1.05
CLK3-202ENST00000395066 ADAMTS5Q9UNA0 930 aa21.62■■□□□ 1.05
CLK3-202ENST00000395066 ATP2A1O14983 1001 aa21.62■■□□□ 1.05
CLK3-202ENST00000395066 ATG7O95352 703 aa21.62■■□□□ 1.05
CLK3-202ENST00000395066 KRT3P12035 628 aa21.62■■□□□ 1.05
CLK3-202ENST00000395066 EPHB2P29323 1055 aa21.62■■□□□ 1.05
CLK3-202ENST00000395066 GMPSP49915 693 aaPredicted RBP21.62■■□□□ 1.05
CLK3-202ENST00000395066 TAF1BQ53T94 588 aaPredicted RBP21.62■■□□□ 1.05
CLK3-202ENST00000395066 EFHC2Q5JST6 749 aa21.62■■□□□ 1.05
CLK3-202ENST00000395066 IGDCC3Q8IVU1 814 aa21.62■■□□□ 1.05
CLK3-202ENST00000395066 TCP10LQ8TDR4 215 aa21.62■■□□□ 1.05
CLK3-202ENST00000395066 NUDCD1Q96RS6 583 aa21.62■■□□□ 1.05
CLK3-202ENST00000395066 CPXM1Q96SM3 734 aa21.62■■□□□ 1.05
CLK3-202ENST00000395066 METTL5Q9NRN9 209 aaKnown RBP21.62■■□□□ 1.05
CLK3-202ENST00000395066 GINM1Q9NU53 330 aa21.62■■□□□ 1.05
CLK3-202ENST00000395066 HMGXB4Q9UGU5 601 aa21.62■■□□□ 1.05
CLK3-202ENST00000395066 CHMP2BQ9UQN3 213 aa21.62■■□□□ 1.05
CLK3-202ENST00000395066 B4GALT5O43286 388 aa21.61■■□□□ 1.05
CLK3-202ENST00000395066 LSM8O95777 96 aaKnown RBP21.61■■□□□ 1.05
CLK3-202ENST00000395066 PSMC1P62191 440 aaKnown RBP21.61■■□□□ 1.05
CLK3-202ENST00000395066 BASP1P80723 227 aaKnown RBP21.61■■□□□ 1.05
CLK3-202ENST00000395066 NPNTQ6UXI9 565 aa21.61■■□□□ 1.05
CLK3-202ENST00000395066 DPH6Q7L8W6 267 aa21.61■■□□□ 1.05
CLK3-202ENST00000395066 RNF149Q8NC42 400 aa21.61■■□□□ 1.05
CLK3-202ENST00000395066 RFWD2Q8NHY2 731 aa21.61■■□□□ 1.05
CLK3-202ENST00000395066 ZNF483Q8TF39 744 aaPredicted RBP21.61■■□□□ 1.05
CLK3-202ENST00000395066 LRRN4Q8WUT4 740 aa21.61■■□□□ 1.05
CLK3-202ENST00000395066 RSAD2Q8WXG1 361 aa21.61■■□□□ 1.05
CLK3-202ENST00000395066 PTPRN2Q92932 1015 aa21.61■■□□□ 1.05
CLK3-202ENST00000395066 KIF3CO14782 793 aa21.61■■□□□ 1.05
CLK3-202ENST00000395066 SLC18A1P54219 525 aa21.61■■□□□ 1.05
CLK3-202ENST00000395066 NAT8LQ8N9F0 302 aa21.61■■□□□ 1.05
CLK3-202ENST00000395066 R3HDMLQ9H3Y0 253 aa21.61■■□□□ 1.05
CLK3-202ENST00000395066 DDX56Q9NY93 547 aaKnown RBP21.61■■□□□ 1.05
CLK3-202ENST00000395066 KAT6AQ92794 2004 aa21.61■■□□□ 1.05
CLK3-202ENST00000395066 SIP14410 1827 aa21.61■■□□□ 1.05
CLK3-202ENST00000395066 FARP2O94887 1054 aaPredicted RBP21.6■■□□□ 1.05
CLK3-202ENST00000395066 RASSF2P50749 326 aa21.6■■□□□ 1.05
CLK3-202ENST00000395066 STAT5BP51692 787 aa21.6■■□□□ 1.05
CLK3-202ENST00000395066 MMRN1Q13201 1228 aa21.6■■□□□ 1.05
CLK3-202ENST00000395066 TARBP2Q15633 366 aaKnown RBP21.6■■□□□ 1.05
CLK3-202ENST00000395066 DUOXA2Q1HG44 320 aa21.6■■□□□ 1.05
CLK3-202ENST00000395066 SH3PXD2AQ5TCZ1 1133 aa21.6■■□□□ 1.05
CLK3-202ENST00000395066 CATSPERGQ6ZRH7 1159 aa21.6■■□□□ 1.05
CLK3-202ENST00000395066 MTDHQ86UE4 582 aaKnown RBP21.6■■□□□ 1.05
CLK3-202ENST00000395066 PPIL6Q8IXY8 311 aa21.6■■□□□ 1.05
CLK3-202ENST00000395066 TRAPPC12Q8WVT3 735 aa21.6■■□□□ 1.05
CLK3-202ENST00000395066 LBHD1Q9BQE6 289 aaPredicted RBP21.6■■□□□ 1.05
CLK3-202ENST00000395066 NIFKQ9BYG3 293 aaKnown RBP21.6■■□□□ 1.05
CLK3-202ENST00000395066 XYLT2Q9H1B5 865 aa21.6■■□□□ 1.05
CLK3-202ENST00000395066 SNCAIPQ9Y6H5 919 aa21.6■■□□□ 1.05
CLK3-202ENST00000395066 TOM1L1O75674 476 aa21.6■■□□□ 1.05
CLK3-202ENST00000395066 LINGO3P0C6S8 592 aa21.6■■□□□ 1.05
CLK3-202ENST00000395066 KDELR1P24390 212 aa21.6■■□□□ 1.05
CLK3-202ENST00000395066 ABCD1P33897 745 aa21.6■■□□□ 1.05
CLK3-202ENST00000395066 TCF7P36402 384 aaPredicted RBP21.6■■□□□ 1.05
CLK3-202ENST00000395066 LY6KQ17RY6 165 aa21.6■■□□□ 1.05
CLK3-202ENST00000395066 RFX6Q8HWS3 928 aa21.6■■□□□ 1.05
CLK3-202ENST00000395066 ENDOVQ8N8Q3 282 aaKnown RBP21.6■■□□□ 1.05
CLK3-202ENST00000395066 TWNKQ96RR1 684 aa21.6■■□□□ 1.05
CLK3-202ENST00000395066 CALN1Q9BXU9 219 aa21.6■■□□□ 1.05
CLK3-202ENST00000395066 TMEM134Q9H6X4 195 aa21.6■■□□□ 1.05
CLK3-202ENST00000395066 AS3MTQ9HBK9 375 aa21.6■■□□□ 1.05
CLK3-202ENST00000395066 SLC24A2Q9UI40 661 aa21.6■■□□□ 1.05
CLK3-202ENST00000395066 XPO7Q9UIA9 1087 aaKnown RBP21.6■■□□□ 1.05
CLK3-202ENST00000395066 H0Y3Z8 333 aa21.59■■□□□ 1.05
CLK3-202ENST00000395066 ERBB2P04626 1255 aa21.59■■□□□ 1.05
CLK3-202ENST00000395066 HOXC6P09630 235 aa21.59■■□□□ 1.05
CLK3-202ENST00000395066 CALRP27797 417 aaKnown RBP21.59■■□□□ 1.05
CLK3-202ENST00000395066 ARL4CP56559 192 aa21.59■■□□□ 1.05
CLK3-202ENST00000395066 ZNF280AP59817 542 aaPredicted RBP21.59■■□□□ 1.05
CLK3-202ENST00000395066 SGSM1Q2NKQ1 1148 aa21.59■■□□□ 1.05
CLK3-202ENST00000395066 NLRP9Q7RTR0 991 aa21.59■■□□□ 1.05
CLK3-202ENST00000395066 ZC3H18Q86VM9 953 aaKnown RBP21.59■■□□□ 1.05
CLK3-202ENST00000395066 CCDC125Q86Z20 511 aa21.59■■□□□ 1.05
CLK3-202ENST00000395066 PALM2Q8IXS6 379 aa21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms