RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 GLI1P08151 1106 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 GZMAP12544 262 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 KLK7P49862 253 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 CDR2Q01850 454 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 UBXN1Q04323 297 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 NNTQ13423 1086 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 BIRC3Q13489 604 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 DRAP1Q14919 205 aaPredicted RBP7.45□□□□□ -1.22
LIMA1-202ENST00000394943 MSANTD2Q6P1R3 559 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 TTC30AQ86WT1 665 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 FAM217AQ8IXS0 508 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 RBBP8NLQ8NC74 664 aaPredicted RBP7.45□□□□□ -1.22
LIMA1-202ENST00000394943 ARNTL2Q8WYA1 636 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 MYLPFQ96A32 169 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 PGAP3Q96FM1 320 aaPredicted RBP7.45□□□□□ -1.22
LIMA1-202ENST00000394943 ISCUQ9H1K1 167 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 VPS16Q9H269 839 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 STOML2Q9UJZ1 356 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 HCFC2Q9Y5Z7 792 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 MYBPHLA2RUH7 354 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 LOC730098B7Z3J9 87 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 PHACTR2O75167 634 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 MTA2O94776 668 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 ENDOD1O94919 500 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 STAT1P42224 750 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 TSPY1Q01534 308 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 FMO1Q01740 532 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 ELMSAN1Q6PJG2 1045 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 UBE2Q2Q8WVN8 375 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 PPP2R3CQ969Q6 453 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 CALR3Q96L12 384 aaKnown RBP7.45□□□□□ -1.22
LIMA1-202ENST00000394943 EHD2Q9NZN4 543 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 USTQ9Y2C2 406 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 YIPF1Q9Y548 306 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 NYNRINQ9P2P1 1898 aaKnown RBP7.44□□□□□ -1.22
LIMA1-202ENST00000394943 CHD5Q8TDI0 1954 aa7.44□□□□□ -1.22
LIMA1-202ENST00000394943 GOLGA6L19H0YKK7 550 aa7.44□□□□□ -1.22
LIMA1-202ENST00000394943 MED7O43513 233 aa7.44□□□□□ -1.22
LIMA1-202ENST00000394943 MFAP3LO75121 409 aa7.44□□□□□ -1.22
LIMA1-202ENST00000394943 GLUD1P00367 558 aa7.44□□□□□ -1.22
LIMA1-202ENST00000394943 CYP11B1P15538 503 aa7.44□□□□□ -1.22
LIMA1-202ENST00000394943 HOXD11P31277 338 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-202ENST00000394943 BCAT1P54687 386 aa7.44□□□□□ -1.22
LIMA1-202ENST00000394943 RPL10AP62906 217 aaKnown RBP7.44□□□□□ -1.22
LIMA1-202ENST00000394943 BST2Q10589 180 aaKnown RBP7.44□□□□□ -1.22
LIMA1-202ENST00000394943 TPRNQ4KMQ1 711 aa7.44□□□□□ -1.22
LIMA1-202ENST00000394943 TC2NQ8N9U0 490 aa7.44□□□□□ -1.22
LIMA1-202ENST00000394943 NECTIN4Q96NY8 510 aa7.44□□□□□ -1.22
LIMA1-202ENST00000394943 SNX25Q9H3E2 840 aa7.44□□□□□ -1.22
LIMA1-202ENST00000394943 PRDM12Q9H4Q4 367 aa7.44□□□□□ -1.22
LIMA1-202ENST00000394943 UBE2TQ9NPD8 197 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-202ENST00000394943 TRPV5Q9NQA5 729 aa7.44□□□□□ -1.22
LIMA1-202ENST00000394943 IFNKQ9P0W0 207 aa7.44□□□□□ -1.22
LIMA1-202ENST00000394943 INTUQ9ULD6 942 aa7.44□□□□□ -1.22
LIMA1-202ENST00000394943 CDY1Q9Y6F8 540 aa7.44□□□□□ -1.22
LIMA1-202ENST00000394943 RTN3O95197 1032 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-202ENST00000394943 SRGAP2BP0DMP2 458 aa7.44□□□□□ -1.22
LIMA1-202ENST00000394943 NPR3P17342 541 aa7.44□□□□□ -1.22
LIMA1-202ENST00000394943 RAP1GAPP47736 663 aa7.44□□□□□ -1.22
LIMA1-202ENST00000394943 CDH8P55286 799 aa7.44□□□□□ -1.22
LIMA1-202ENST00000394943 ADCY1Q08828 1119 aa7.44□□□□□ -1.22
LIMA1-202ENST00000394943 SMAD2Q15796 467 aaKnown RBP7.44□□□□□ -1.22
LIMA1-202ENST00000394943 PPP1R26Q5T8A7 1209 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-202ENST00000394943 FAM117BQ6P1L5 589 aa7.44□□□□□ -1.22
LIMA1-202ENST00000394943 KREMEN2Q8NCW0 462 aa7.44□□□□□ -1.22
LIMA1-202ENST00000394943 NEK11Q8NG66 645 aa7.44□□□□□ -1.22
LIMA1-202ENST00000394943 ZNF606Q8WXB4 792 aa7.44□□□□□ -1.22
LIMA1-202ENST00000394943 KHSRPQ92945 711 aaKnown RBP eCLIP7.44□□□□□ -1.22
LIMA1-202ENST00000394943 FAM212AQ96EL1 285 aa7.44□□□□□ -1.22
LIMA1-202ENST00000394943 MCRS1Q96EZ8 462 aa7.44□□□□□ -1.22
LIMA1-202ENST00000394943 SLC2A13Q96QE2 648 aa7.44□□□□□ -1.22
LIMA1-202ENST00000394943 GAS2L1Q99501 681 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-202ENST00000394943 WDR6Q9NNW5 1121 aaKnown RBP7.44□□□□□ -1.22
LIMA1-202ENST00000394943 CLIC5Q9NZA1 410 aa7.44□□□□□ -1.22
LIMA1-202ENST00000394943 IGLV3-27P01718 113 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 TPM3P06753 285 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 WEE2P0C1S8 567 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 ACADSBP45954 432 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 CACNA2D1P54289 1103 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 NOMO3P69849 1222 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 E4F1Q66K89 784 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-202ENST00000394943 NOP9Q86U38 636 aaKnown RBP7.43□□□□□ -1.22
LIMA1-202ENST00000394943 AZIN2Q96A70 460 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 DMAP1Q9NPF5 467 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-202ENST00000394943 ENTPD7Q9NQZ7 604 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-202ENST00000394943 I3L4J1 428 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 DPYSL4O14531 572 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 GREM1O60565 184 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 FBXO21O94952 628 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 LATS1O95835 1130 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 OAS1P00973 400 aaKnown RBP7.43□□□□□ -1.22
LIMA1-202ENST00000394943 OR1D2P34982 312 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 KIF11P52732 1056 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 CLEC16AQ2KHT3 1053 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 SGO2Q562F6 1265 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 GJB7Q6PEY0 223 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 POTEHQ6S545 545 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 MON1BQ7L1V2 547 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 PDZD8Q8NEN9 1154 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms