RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 UMPSP11172 480 aa11.02□□□□□ -0.64
RTN3-206ENST00000377819 DSG3P32926 999 aa11.02□□□□□ -0.64
RTN3-206ENST00000377819 TGFBR2P37173 567 aa11.02□□□□□ -0.64
RTN3-206ENST00000377819 SULT1E1P49888 294 aa11.02□□□□□ -0.64
RTN3-206ENST00000377819 BYSLQ13895 437 aaKnown RBP11.02□□□□□ -0.64
RTN3-206ENST00000377819 USP17L1Q7RTZ2 530 aa11.02□□□□□ -0.64
RTN3-206ENST00000377819 NECAB2Q7Z6G3 386 aa11.02□□□□□ -0.64
RTN3-206ENST00000377819 MCOLN3Q8TDD5 553 aa11.02□□□□□ -0.64
RTN3-206ENST00000377819 TRPC4APQ8TEL6 797 aa11.02□□□□□ -0.64
RTN3-206ENST00000377819 CENPIQ92674 756 aaPredicted RBP11.02□□□□□ -0.64
RTN3-206ENST00000377819 DDX47Q9H0S4 455 aaKnown RBP11.02□□□□□ -0.64
RTN3-206ENST00000377819 OSGEPL1Q9H4B0 414 aa11.02□□□□□ -0.64
RTN3-206ENST00000377819 ELL3Q9HB65 397 aaPredicted RBP11.02□□□□□ -0.64
RTN3-206ENST00000377819 HMG20AQ9NP66 347 aa11.02□□□□□ -0.64
RTN3-206ENST00000377819 FBXO10Q9UK96 956 aa11.02□□□□□ -0.64
RTN3-206ENST00000377819 CD109Q6YHK3 1445 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 SOWAHDA6NJG2 315 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 C2orf81A6NN90 581 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 ATP9AO75110 1047 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 ATP6V1B1P15313 513 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 IFNAR1P17181 557 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 PRELPP51888 382 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 ZNF211Q13398 564 aaPredicted RBP11.02□□□□□ -0.65
RTN3-206ENST00000377819 SPANXN2Q5MJ10 180 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 DAB2IPQ5VWQ8 1189 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 NLRP14Q86W24 1093 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 SUGP1Q8IWZ8 645 aaKnown RBP11.02□□□□□ -0.65
RTN3-206ENST00000377819 ZCCHC7Q8N3Z6 543 aaKnown RBP11.02□□□□□ -0.65
RTN3-206ENST00000377819 TTLL6Q8N841 843 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 MRPS31Q92665 395 aaKnown RBP11.02□□□□□ -0.65
RTN3-206ENST00000377819 CHAMP1Q96JM3 812 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 SPATA33Q96N06 139 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 TAF1DQ9H5J8 278 aaPredicted RBP11.02□□□□□ -0.65
RTN3-206ENST00000377819 CCDC177Q9NQR7 707 aaPredicted RBP11.02□□□□□ -0.65
RTN3-206ENST00000377819 SLC38A7Q9NVC3 462 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 MARCOQ9UEW3 520 aaPredicted RBP11.02□□□□□ -0.65
RTN3-206ENST00000377819 SNX9Q9Y5X1 595 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 GMEB1Q9Y692 573 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 ABCC3O15438 1527 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 FANCAO15360 1455 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 MYOM2P54296 1465 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 HS6ST1O60243 411 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 TRIM3O75382 744 aaPredicted RBP11.02□□□□□ -0.65
RTN3-206ENST00000377819 SNRPAP09012 282 aaKnown RBP11.02□□□□□ -0.65
RTN3-206ENST00000377819 ACADMP11310 421 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 SLC1A1P43005 524 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 CACNB3P54284 484 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 TAF2Q6P1X5 1199 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 CHPFQ8IZ52 775 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 TMEM237Q96Q45 408 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 POLR1BQ9H9Y6 1135 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.02□□□□□ -0.654e-10■■■■□ 20.1
RTN3-206ENST00000377819 SH3BP4Q9P0V3 963 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 ZNF624Q9P2J8 865 aaPredicted RBP11.02□□□□□ -0.65
RTN3-206ENST00000377819 HERC5Q9UII4 1024 aaKnown RBP11.02□□□□□ -0.65
RTN3-206ENST00000377819 AGO2Q9UKV8 859 aaKnown RBP11.02□□□□□ -0.65
RTN3-206ENST00000377819 KNDC1Q76NI1 1749 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 USPL1Q5W0Q7 1092 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 PGBD2Q6P3X8 592 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 CASP12Q6UXS9 341 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 TRPV3Q8NET8 790 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 NEK7Q8TDX7 302 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 ATP8B4Q8TF62 1192 aa11.02□□□□□ -0.65
RTN3-206ENST00000377819 SAMSN1Q9NSI8 373 aaKnown RBP11.02□□□□□ -0.65
RTN3-206ENST00000377819 MAP3K19Q56UN5 1328 aa11.01□□□□□ -0.65
RTN3-206ENST00000377819 UGGT1Q9NYU2 1555 aa11.01□□□□□ -0.65
RTN3-206ENST00000377819 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.01□□□□□ -0.65
RTN3-206ENST00000377819 TRIM43BA6NCK2 446 aa11.01□□□□□ -0.65
RTN3-206ENST00000377819 SLC2A3P11169 496 aa11.01□□□□□ -0.65
RTN3-206ENST00000377819 MYL12AP19105 171 aa11.01□□□□□ -0.65
RTN3-206ENST00000377819 YWHABP31946 246 aaKnown RBP11.01□□□□□ -0.65
RTN3-206ENST00000377819 SLC11A2P49281 568 aa11.01□□□□□ -0.65
RTN3-206ENST00000377819 ARF3P61204 181 aaPredicted RBP11.01□□□□□ -0.65
RTN3-206ENST00000377819 COPZ1P61923 177 aa11.01□□□□□ -0.65
RTN3-206ENST00000377819 ARF1P84077 181 aaKnown RBP11.01□□□□□ -0.65
RTN3-206ENST00000377819 ZNF177Q13360 481 aaPredicted RBP11.01□□□□□ -0.65
RTN3-206ENST00000377819 DPCR1Q3MIW9 517 aa11.01□□□□□ -0.65
RTN3-206ENST00000377819 SYDE1Q6ZW31 735 aaPredicted RBP11.01□□□□□ -0.65
RTN3-206ENST00000377819 TERB1Q8NA31 727 aa11.01□□□□□ -0.65
RTN3-206ENST00000377819 DNAJC9Q8WXX5 260 aa11.01□□□□□ -0.65
RTN3-206ENST00000377819 KATNAL1Q9BW62 490 aa11.01□□□□□ -0.65
RTN3-206ENST00000377819 RRAGDQ9NQL2 400 aaPredicted RBP11.01□□□□□ -0.65
RTN3-206ENST00000377819 ARHGAP28Q9P2N2 729 aa11.01□□□□□ -0.65
RTN3-206ENST00000377819 SNX6Q9UNH7 406 aa11.01□□□□□ -0.65
RTN3-206ENST00000377819 MTO1Q9Y2Z2 717 aaKnown RBP11.01□□□□□ -0.65
RTN3-206ENST00000377819 USP17L5A8MUK1 530 aa11.01□□□□□ -0.65
RTN3-206ENST00000377819 SUPT7LO94864 414 aa11.01□□□□□ -0.65
RTN3-206ENST00000377819 CD2BP2O95400 341 aaKnown RBP11.01□□□□□ -0.65
RTN3-206ENST00000377819 ASS1P00966 412 aaKnown RBP11.01□□□□□ -0.65
RTN3-206ENST00000377819 HNRNPH2P55795 449 aaKnown RBP11.01□□□□□ -0.65
RTN3-206ENST00000377819 ZNF200P98182 395 aaPredicted RBP11.01□□□□□ -0.65
RTN3-206ENST00000377819 RBBP4Q09028 425 aa11.01□□□□□ -0.65
RTN3-206ENST00000377819 UBE2SQ16763 222 aa11.01□□□□□ -0.65
RTN3-206ENST00000377819 SCARA3Q6AZY7 606 aa11.01□□□□□ -0.65
RTN3-206ENST00000377819 RASSF6Q6ZTQ3 369 aa11.01□□□□□ -0.65
RTN3-206ENST00000377819 CYFIP1Q7L576 1253 aa11.01□□□□□ -0.65
RTN3-206ENST00000377819 RCOR2Q8IZ40 523 aa11.01□□□□□ -0.65
RTN3-206ENST00000377819 C3orf20Q8ND61 904 aa11.01□□□□□ -0.65
RTN3-206ENST00000377819 IPMKQ8NFU5 416 aa11.01□□□□□ -0.65
RTN3-206ENST00000377819 PHF11Q9UIL8 331 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms