RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 FCHO1O14526 889 aa22.15■■□□□ 1.14
UPF3A-202ENST00000375299 CALB1P05937 261 aa22.15■■□□□ 1.14
UPF3A-202ENST00000375299 MYL2P10916 166 aa22.15■■□□□ 1.14
UPF3A-202ENST00000375299 TSHRP16473 764 aa22.15■■□□□ 1.14
UPF3A-202ENST00000375299 BGNP21810 368 aa22.15■■□□□ 1.14
UPF3A-202ENST00000375299 GHRHRQ02643 423 aa22.15■■□□□ 1.14
UPF3A-202ENST00000375299 FOXB2Q5VYV0 432 aa22.15■■□□□ 1.14
UPF3A-202ENST00000375299 DCUN1D2Q6PH85 259 aa22.15■■□□□ 1.14
UPF3A-202ENST00000375299 SYTL5Q8TDW5 730 aaPredicted RBP22.15■■□□□ 1.14
UPF3A-202ENST00000375299 FAM151AQ8WW52 585 aa22.15■■□□□ 1.14
UPF3A-202ENST00000375299 FAM111AQ96PZ2 611 aa22.15■■□□□ 1.14
UPF3A-202ENST00000375299 ZNF184Q99676 751 aaPredicted RBP22.15■■□□□ 1.14
UPF3A-202ENST00000375299 PPP1R12CQ9BZL4 782 aa22.15■■□□□ 1.14
UPF3A-202ENST00000375299 ARHGEF4Q9NR80 690 aa22.15■■□□□ 1.14
UPF3A-202ENST00000375299 KRT82Q9NSB4 513 aa22.15■■□□□ 1.14
UPF3A-202ENST00000375299 GINM1Q9NU53 330 aa22.15■■□□□ 1.14
UPF3A-202ENST00000375299 TBXAS1P24557 533 aaPredicted RBP22.14■■□□□ 1.14
UPF3A-202ENST00000375299 PGM1P36871 562 aa22.14■■□□□ 1.14
UPF3A-202ENST00000375299 LIG4P49917 911 aa22.14■■□□□ 1.14
UPF3A-202ENST00000375299 RAP1GDS1P52306 607 aa22.14■■□□□ 1.14
UPF3A-202ENST00000375299 NLRP11P59045 1033 aaKnown RBP22.14■■□□□ 1.14
UPF3A-202ENST00000375299 OTUD4Q01804 1114 aaKnown RBP22.14■■□□□ 1.14
UPF3A-202ENST00000375299 BBS9Q3SYG4 887 aa22.14■■□□□ 1.14
UPF3A-202ENST00000375299 MTHFD1LQ6UB35 978 aa22.14■■□□□ 1.14
UPF3A-202ENST00000375299 ZNF606Q8WXB4 792 aa22.14■■□□□ 1.14
UPF3A-202ENST00000375299 POLIQ9UNA4 740 aa22.14■■□□□ 1.14
UPF3A-202ENST00000375299 C2orf71A6NGG8 1288 aa22.14■■□□□ 1.13
UPF3A-202ENST00000375299 APBA3O96018 575 aa22.14■■□□□ 1.13
UPF3A-202ENST00000375299 RPL22P35268 128 aaKnown RBP22.14■■□□□ 1.13
UPF3A-202ENST00000375299 PIGHQ14442 188 aaPredicted RBP22.14■■□□□ 1.13
UPF3A-202ENST00000375299 PGM5Q15124 567 aa22.14■■□□□ 1.13
UPF3A-202ENST00000375299 GSTA3Q16772 222 aa22.14■■□□□ 1.13
UPF3A-202ENST00000375299 KBTBD2Q8IY47 623 aa22.14■■□□□ 1.13
UPF3A-202ENST00000375299 ACTL9Q8TC94 416 aa22.14■■□□□ 1.13
UPF3A-202ENST00000375299 C10orf88Q9H8K7 445 aa22.14■■□□□ 1.13
UPF3A-202ENST00000375299 ZNF70Q9UC06 446 aaPredicted RBP22.14■■□□□ 1.13
UPF3A-202ENST00000375299 STRIP2Q9ULQ0 834 aa22.14■■□□□ 1.13
UPF3A-202ENST00000375299 WASF2Q9Y6W5 498 aa22.14■■□□□ 1.13
UPF3A-202ENST00000375299 TMEM63AO94886 807 aa22.13■■□□□ 1.13
UPF3A-202ENST00000375299 MYCLP12524 364 aaPredicted RBP22.13■■□□□ 1.13
UPF3A-202ENST00000375299 DYNLT1P63172 113 aa22.13■■□□□ 1.13
UPF3A-202ENST00000375299 SLC18A2Q05940 514 aa22.13■■□□□ 1.13
UPF3A-202ENST00000375299 PTK7Q13308 1070 aa22.13■■□□□ 1.13
UPF3A-202ENST00000375299 SERAC1Q96JX3 654 aa22.13■■□□□ 1.13
UPF3A-202ENST00000375299 TAAR1Q96RJ0 339 aa22.13■■□□□ 1.13
UPF3A-202ENST00000375299 CYTH2Q99418 400 aa22.13■■□□□ 1.13
UPF3A-202ENST00000375299 TRIM4Q9C037 500 aa22.13■■□□□ 1.13
UPF3A-202ENST00000375299 SAE1Q9UBE0 346 aaPredicted RBP22.13■■□□□ 1.13
UPF3A-202ENST00000375299 ANGPTL2Q9UKU9 493 aa22.13■■□□□ 1.13
UPF3A-202ENST00000375299 NUB1Q9Y5A7 615 aa22.13■■□□□ 1.13
UPF3A-202ENST00000375299 CNTNAP1P78357 1384 aa22.13■■□□□ 1.13
UPF3A-202ENST00000375299 TCRBV7S3A2A0A539 114 aa22.13■■□□□ 1.13
UPF3A-202ENST00000375299 MAGEC1O60732 1142 aa22.13■■□□□ 1.13
UPF3A-202ENST00000375299 AMPD1P23109 780 aa22.13■■□□□ 1.13
UPF3A-202ENST00000375299 PSMC4P43686 418 aa22.13■■□□□ 1.13
UPF3A-202ENST00000375299 ACOT2P49753 483 aa22.13■■□□□ 1.13
UPF3A-202ENST00000375299 PDIK1LQ8N165 341 aa22.13■■□□□ 1.13
UPF3A-202ENST00000375299 CCDC110Q8TBZ0 833 aa22.13■■□□□ 1.13
UPF3A-202ENST00000375299 FGD4Q96M96 766 aa22.13■■□□□ 1.13
UPF3A-202ENST00000375299 GLIS2Q9BZE0 524 aaPredicted RBP22.13■■□□□ 1.13
UPF3A-202ENST00000375299 NMUR2Q9GZQ4 415 aa22.13■■□□□ 1.13
UPF3A-202ENST00000375299 CNTN3Q9P232 1028 aa22.13■■□□□ 1.13
UPF3A-202ENST00000375299 ARHGAP28Q9P2N2 729 aa22.13■■□□□ 1.13
UPF3A-202ENST00000375299 AGTPBP1Q9UPW5 1226 aa22.13■■□□□ 1.13
UPF3A-202ENST00000375299 C3orf70A6NLC5 250 aaPredicted RBP22.12■■□□□ 1.13
UPF3A-202ENST00000375299 RTP1P59025 263 aa22.12■■□□□ 1.13
UPF3A-202ENST00000375299 NIPA2Q8N8Q9 360 aa22.12■■□□□ 1.13
UPF3A-202ENST00000375299 RSAD2Q8WXG1 361 aa22.12■■□□□ 1.13
UPF3A-202ENST00000375299 FAM161BQ96MY7 647 aa22.12■■□□□ 1.13
UPF3A-202ENST00000375299 FRMD8P1Q9BZ68 369 aaPredicted RBP22.12■■□□□ 1.13
UPF3A-202ENST00000375299 ARMCX1Q9P291 453 aa22.12■■□□□ 1.13
UPF3A-202ENST00000375299 PDP2Q9P2J9 529 aa22.12■■□□□ 1.13
UPF3A-202ENST00000375299 XPO7Q9UIA9 1087 aaKnown RBP22.12■■□□□ 1.13
UPF3A-202ENST00000375299 AGO2Q9UKV8 859 aaKnown RBP22.12■■□□□ 1.13
UPF3A-202ENST00000375299 F8W8V4 182 aa22.12■■□□□ 1.13
UPF3A-202ENST00000375299 MTM1Q13496 603 aa22.12■■□□□ 1.13
UPF3A-202ENST00000375299 TAB3Q8N5C8 712 aaPredicted RBP22.12■■□□□ 1.13
UPF3A-202ENST00000375299 TTC13Q8NBP0 860 aa22.12■■□□□ 1.13
UPF3A-202ENST00000375299 MCPH1Q8NEM0 835 aa22.12■■□□□ 1.13
UPF3A-202ENST00000375299 RDM1Q8NG50 284 aa22.12■■□□□ 1.13
UPF3A-202ENST00000375299 XPNPEP1Q9NQW7 623 aa22.12■■□□□ 1.13
UPF3A-202ENST00000375299 CHMP2BQ9UQN3 213 aa22.12■■□□□ 1.13
UPF3A-202ENST00000375299 FAM237BA0A1B0GVD1 139 aa22.11■■□□□ 1.13
UPF3A-202ENST00000375299 SMAPO00193 183 aa22.11■■□□□ 1.13
UPF3A-202ENST00000375299 CPA2P48052 419 aa22.11■■□□□ 1.13
UPF3A-202ENST00000375299 ZNF132P52740 706 aa22.11■■□□□ 1.13
UPF3A-202ENST00000375299 TAP1Q03518 808 aa22.11■■□□□ 1.13
UPF3A-202ENST00000375299 SH2D5Q6ZV89 423 aa22.11■■□□□ 1.13
UPF3A-202ENST00000375299 ALYREFQ86V81 257 aaKnown RBP22.11■■□□□ 1.13
UPF3A-202ENST00000375299 TMPRSS6Q8IU80 811 aa22.11■■□□□ 1.13
UPF3A-202ENST00000375299 CDAN1Q8IWY9 1227 aa22.11■■□□□ 1.13
UPF3A-202ENST00000375299 DDX43Q9NXZ2 648 aaKnown RBP22.11■■□□□ 1.13
UPF3A-202ENST00000375299 GABBR1Q9UBS5 961 aa22.11■■□□□ 1.13
UPF3A-202ENST00000375299 EFR3BQ9Y2G0 817 aa22.11■■□□□ 1.13
UPF3A-202ENST00000375299 PCDHA10Q9Y5I2 948 aa22.11■■□□□ 1.13
UPF3A-202ENST00000375299 IKBKGQ9Y6K9 419 aa22.11■■□□□ 1.13
UPF3A-202ENST00000375299 ZNF541Q9H0D2 1346 aa22.11■■□□□ 1.13
UPF3A-202ENST00000375299 KLF11O14901 512 aa22.11■■□□□ 1.13
UPF3A-202ENST00000375299 ZNF862O60290 1169 aa22.11■■□□□ 1.13
UPF3A-202ENST00000375299 SERPINB4P48594 390 aa22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms