RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 PPP3CAQ08209 521 aa19.61■□□□□ 0.73
CLN3-202ENST00000355477 ANGPT1Q15389 498 aa19.61■□□□□ 0.73
CLN3-202ENST00000355477 SGSM1Q2NKQ1 1148 aa19.61■□□□□ 0.73
CLN3-202ENST00000355477 VSTM1Q6UX27 236 aa19.61■□□□□ 0.73
CLN3-202ENST00000355477 SCARA5Q6ZMJ2 495 aa19.61■□□□□ 0.73
CLN3-202ENST00000355477 YAF2Q8IY57 180 aa19.61■□□□□ 0.73
CLN3-202ENST00000355477 FAM186BQ8IYM0 893 aa19.61■□□□□ 0.73
CLN3-202ENST00000355477 CMTM8Q8IZV2 173 aa19.61■□□□□ 0.73
CLN3-202ENST00000355477 ZFYVE19Q96K21 471 aa19.61■□□□□ 0.73
CLN3-202ENST00000355477 TIGD1Q96MW7 591 aa19.61■□□□□ 0.73
CLN3-202ENST00000355477 GSDMAQ96QA5 445 aa19.61■□□□□ 0.73
CLN3-202ENST00000355477 LTB4R2Q9NPC1 389 aa19.61■□□□□ 0.73
CLN3-202ENST00000355477 TMEM30AQ9NV96 361 aa19.61■□□□□ 0.73
CLN3-202ENST00000355477 RMND1Q9NWS8 449 aa19.61■□□□□ 0.73
CLN3-202ENST00000355477 HELZP42694 1942 aaKnown RBP19.61■□□□□ 0.73
CLN3-202ENST00000355477 CLDN5O00501 218 aa19.6■□□□□ 0.73
CLN3-202ENST00000355477 DPYSL4O14531 572 aa19.6■□□□□ 0.73
CLN3-202ENST00000355477 CHADO15335 359 aa19.6■□□□□ 0.73
CLN3-202ENST00000355477 CLSTN1O94985 981 aa19.6■□□□□ 0.73
CLN3-202ENST00000355477 HLA-DRAP01903 254 aa19.6■□□□□ 0.73
CLN3-202ENST00000355477 GCLMP48507 274 aa19.6■□□□□ 0.73
CLN3-202ENST00000355477 CACNA2D1P54289 1103 aa19.6■□□□□ 0.73
CLN3-202ENST00000355477 FZD5Q13467 585 aa19.6■□□□□ 0.73
CLN3-202ENST00000355477 ZNF658Q5TYW1 1059 aaPredicted RBP19.6■□□□□ 0.73
CLN3-202ENST00000355477 SPOPLQ6IQ16 392 aa19.6■□□□□ 0.73
CLN3-202ENST00000355477 ZNF852Q6ZMS4 543 aa19.6■□□□□ 0.73
CLN3-202ENST00000355477 INTS8Q75QN2 995 aaKnown RBP19.6■□□□□ 0.73
CLN3-202ENST00000355477 MON1AQ86VX9 555 aa19.6■□□□□ 0.73
CLN3-202ENST00000355477 B3GALNT2Q8NCR0 500 aa19.6■□□□□ 0.73
CLN3-202ENST00000355477 SPATA17Q96L03 361 aa19.6■□□□□ 0.73
CLN3-202ENST00000355477 B3GNT5Q9BYG0 378 aa19.6■□□□□ 0.73
CLN3-202ENST00000355477 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.6■□□□□ 0.736e-9■■■■■ 134.6
CLN3-202ENST00000355477 OBP2AQ9NY56 170 aa19.6■□□□□ 0.73
CLN3-202ENST00000355477 UXTQ9UBK9 157 aaPredicted RBP19.6■□□□□ 0.73
CLN3-202ENST00000355477 CCL26Q9Y258 94 aa19.6■□□□□ 0.73
CLN3-202ENST00000355477 FANCMQ8IYD8 2048 aa19.59■□□□□ 0.73
CLN3-202ENST00000355477 SMC2O95347 1197 aa19.59■□□□□ 0.73
CLN3-202ENST00000355477 ASS1P00966 412 aaKnown RBP19.59■□□□□ 0.73
CLN3-202ENST00000355477 DDX6P26196 483 aaKnown RBP eCLIP19.59■□□□□ 0.73
CLN3-202ENST00000355477 MCCD1P59942 119 aaPredicted RBP19.59■□□□□ 0.73
CLN3-202ENST00000355477 USP46P62068 366 aa19.59■□□□□ 0.73
CLN3-202ENST00000355477 EDRF1Q3B7T1 1238 aa19.59■□□□□ 0.73
CLN3-202ENST00000355477 ZNF687Q8N1G0 1237 aa19.59■□□□□ 0.73
CLN3-202ENST00000355477 MRPS31Q92665 395 aaKnown RBP19.59■□□□□ 0.73
CLN3-202ENST00000355477 USP13Q92995 863 aaPredicted RBP19.59■□□□□ 0.73
CLN3-202ENST00000355477 SMARCE1Q969G3 411 aa19.59■□□□□ 0.73
CLN3-202ENST00000355477 OSBPL6Q9BZF3 934 aa19.59■□□□□ 0.73
CLN3-202ENST00000355477 ZNF518BQ9C0D4 1074 aa19.59■□□□□ 0.73
CLN3-202ENST00000355477 PIAS3Q9Y6X2 628 aa19.59■□□□□ 0.73
CLN3-202ENST00000355477 F8VP50 259 aa19.58■□□□□ 0.72
CLN3-202ENST00000355477 KRT13P13646 458 aa19.58■□□□□ 0.72
CLN3-202ENST00000355477 PIK3CAP42336 1068 aa19.58■□□□□ 0.72
CLN3-202ENST00000355477 PMS1P54277 932 aaKnown RBP19.58■□□□□ 0.72
CLN3-202ENST00000355477 ARHGAP29Q52LW3 1261 aa19.58■□□□□ 0.72
CLN3-202ENST00000355477 COBLL1Q53SF7 1204 aa19.58■□□□□ 0.72
CLN3-202ENST00000355477 ANKRD40Q6AI12 368 aa19.58■□□□□ 0.72
CLN3-202ENST00000355477 ISM2Q6H9L7 571 aa19.58■□□□□ 0.72
CLN3-202ENST00000355477 CELF5Q8N6W0 485 aaKnown RBP19.58■□□□□ 0.72
CLN3-202ENST00000355477 TTC8Q8TAM2 541 aa19.58■□□□□ 0.72
CLN3-202ENST00000355477 RIN3Q8TB24 985 aa19.58■□□□□ 0.72
CLN3-202ENST00000355477 BPIFB1Q8TDL5 484 aa19.58■□□□□ 0.72
CLN3-202ENST00000355477 TAS1R2Q8TE23 839 aa19.58■□□□□ 0.72
CLN3-202ENST00000355477 TAF4BQ92750 862 aa19.58■□□□□ 0.72
CLN3-202ENST00000355477 CLDN23Q96B33 292 aa19.58■□□□□ 0.72
CLN3-202ENST00000355477 SLC22A12Q96S37 553 aa19.58■□□□□ 0.72
CLN3-202ENST00000355477 CYP2S1Q96SQ9 504 aa19.58■□□□□ 0.72
CLN3-202ENST00000355477 NELL2Q99435 816 aa19.58■□□□□ 0.72
CLN3-202ENST00000355477 MMRN2Q9H8L6 949 aa19.58■□□□□ 0.72
CLN3-202ENST00000355477 ZMYM5Q9UJ78 669 aa19.58■□□□□ 0.72
CLN3-202ENST00000355477 CIZ1Q9ULV3 898 aaPredicted RBP19.58■□□□□ 0.72
CLN3-202ENST00000355477 SOBPA7XYQ1 873 aa19.57■□□□□ 0.72
CLN3-202ENST00000355477 AVPR1AP37288 418 aa19.57■□□□□ 0.72
CLN3-202ENST00000355477 ASPAP45381 313 aa19.57■□□□□ 0.72
CLN3-202ENST00000355477 SOX9P48436 509 aa19.57■□□□□ 0.72
CLN3-202ENST00000355477 ENPEPQ07075 957 aa19.57■□□□□ 0.72
CLN3-202ENST00000355477 TNK2Q07912 1038 aa19.57■□□□□ 0.72
CLN3-202ENST00000355477 ORC1Q13415 861 aa19.57■□□□□ 0.72
CLN3-202ENST00000355477 DENND5BQ6ZUT9 1274 aa19.57■□□□□ 0.72
CLN3-202ENST00000355477 PAQR9Q6ZVX9 377 aa19.57■□□□□ 0.72
CLN3-202ENST00000355477 ACOT1Q86TX2 421 aa19.57■□□□□ 0.72
CLN3-202ENST00000355477 C1orf210Q8IVY1 113 aa19.57■□□□□ 0.72
CLN3-202ENST00000355477 C8orf48Q96LL4 319 aa19.57■□□□□ 0.72
CLN3-202ENST00000355477 BCO2Q9BYV7 579 aa19.57■□□□□ 0.72
CLN3-202ENST00000355477 APOBEC3GQ9HC16 384 aaKnown RBP19.57■□□□□ 0.72
CLN3-202ENST00000355477 TDP1Q9NUW8 608 aa19.57■□□□□ 0.72
CLN3-202ENST00000355477 GTSE1Q9NYZ3 720 aa19.57■□□□□ 0.72
CLN3-202ENST00000355477 HMGXB4Q9UGU5 601 aa19.57■□□□□ 0.72
CLN3-202ENST00000355477 NDRG2Q9UN36 371 aaKnown RBP19.57■□□□□ 0.72
CLN3-202ENST00000355477 ATG2BQ96BY7 2078 aa19.56■□□□□ 0.72
CLN3-202ENST00000355477 C2orf78A6NCI8 922 aa19.56■□□□□ 0.72
CLN3-202ENST00000355477 MAN2B1O00754 1011 aa19.56■□□□□ 0.72
CLN3-202ENST00000355477 TRIM66O15016 1216 aa19.56■□□□□ 0.72
CLN3-202ENST00000355477 CETN3O15182 167 aa19.56■□□□□ 0.72
CLN3-202ENST00000355477 P4HA1P13674 534 aa19.56■□□□□ 0.72
CLN3-202ENST00000355477 ANXA13P27216 316 aa19.56■□□□□ 0.72
CLN3-202ENST00000355477 ELOA2Q8IYF1 753 aaPredicted RBP19.56■□□□□ 0.72
CLN3-202ENST00000355477 MAML2Q8IZL2 1156 aaPredicted RBP19.56■□□□□ 0.72
CLN3-202ENST00000355477 ADSSL1Q8N142 457 aa19.56■□□□□ 0.72
CLN3-202ENST00000355477 CSGALNACT1Q8TDX6 532 aa19.56■□□□□ 0.72
CLN3-202ENST00000355477 FAM3CQ92520 227 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms