RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 FAM84AQ96KN4 292 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 MYRFLQ96LU7 910 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 SMAD5Q99717 465 aaKnown RBP2.52□□□□□ -2.01
VPS54-202ENST00000354504 WDR83Q9BRX9 315 aaKnown RBP2.52□□□□□ -2.01
VPS54-202ENST00000354504 EDEM3Q9BZQ6 932 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 ISCUQ9H1K1 167 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 VPS16Q9H269 839 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 XPO5Q9HAV4 1204 aaKnown RBP eCLIP2.52□□□□□ -2.01
VPS54-202ENST00000354504 POLD4Q9HCU8 107 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 GDF3Q9NR23 364 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 AGPAT3Q9NRZ7 376 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 EXOC1Q9NV70 894 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 PIM2Q9P1W9 311 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 LRWD1Q9UFC0 647 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 GTF2IRD1Q9UHL9 959 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 DNAI1Q9UI46 699 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 TTC7AQ9ULT0 858 aaPredicted RBP2.52□□□□□ -2.01
VPS54-202ENST00000354504 PAXBP1Q9Y5B6 917 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 TET1Q8NFU7 2136 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 PASKQ96RG2 1323 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 TRBV23-1A0A0A0MS06 115 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 TMEM82A0PJX8 343 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 F8VZ95 297 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 CES2O00748 559 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 SHOX2O60902 331 aaPredicted RBP2.52□□□□□ -2.01
VPS54-202ENST00000354504 C4BPAP04003 597 aaKnown RBP2.52□□□□□ -2.01
VPS54-202ENST00000354504 PNMA6AP0CW24 399 aaPredicted RBP2.52□□□□□ -2.01
VPS54-202ENST00000354504 RPL34P49207 117 aaKnown RBP2.52□□□□□ -2.01
VPS54-202ENST00000354504 CTTNQ14247 550 aaKnown RBP2.52□□□□□ -2.01
VPS54-202ENST00000354504 ELF2Q15723 593 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 TAZQ16635 292 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 MAN2A1Q16706 1144 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 NKPD1Q17RQ9 610 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 KNOP1Q1ED39 458 aaKnown RBP2.52□□□□□ -2.01
VPS54-202ENST00000354504 ZNF792Q3KQV3 632 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 SLC35F1Q5T1Q4 408 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 PRAMEF18Q5VWM3 479 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 ALKAL1Q6UXT8 129 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 FAM20CQ8IXL6 584 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 ARHGEF39Q8N4T4 335 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 GSTCDQ8NEC7 633 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 LPAR1Q92633 364 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 COPS5Q92905 334 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 ZNF622Q969S3 477 aaKnown RBP eCLIP2.52□□□□□ -2.01
VPS54-202ENST00000354504 ARHGEF26Q96DR7 871 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 CLMNQ96JQ2 1002 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 UIMC1Q96RL1 719 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 SDF4Q9BRK5 362 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 ORAI3Q9BRQ5 295 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 C11orf84Q9BUA3 381 aaPredicted RBP2.52□□□□□ -2.01
VPS54-202ENST00000354504 IFT122Q9HBG6 1241 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 APOBEC3GQ9HC16 384 aaKnown RBP2.52□□□□□ -2.01
VPS54-202ENST00000354504 ERVK-5Q9HDB9 667 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 PRDM10Q9NQV6 1147 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 ZDHHC18Q9NUE0 388 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 KCND2Q9NZV8 630 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 CALCOCO1Q9P1Z2 691 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 CYTH4Q9UIA0 394 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 AKT3Q9Y243 479 aa2.52□□□□□ -2.01
VPS54-202ENST00000354504 IGF2BP3O00425 579 aaKnown RBP eCLIP2.51□□□□□ -2.01
VPS54-202ENST00000354504 SRGAP2O75044 1071 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 LRIG2O94898 1065 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 NAT2P11245 290 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 ECI1P42126 302 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 SLC1A4P43007 532 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 DNM2P50570 870 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 YARSP54577 528 aaKnown RBP2.51□□□□□ -2.01
VPS54-202ENST00000354504 GSCP56915 257 aaPredicted RBP2.51□□□□□ -2.01
VPS54-202ENST00000354504 GFPT1Q06210 699 aaPredicted RBP2.51□□□□□ -2.01
VPS54-202ENST00000354504 KLF1Q13351 362 aaPredicted RBP2.51□□□□□ -2.01
VPS54-202ENST00000354504 EIF4EBP2Q13542 120 aaPredicted RBP2.51□□□□□ -2.01
VPS54-202ENST00000354504 BYSLQ13895 437 aaKnown RBP2.51□□□□□ -2.01
VPS54-202ENST00000354504 MYBPC2Q14324 1141 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 TCEA2Q15560 299 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 LCE1DQ5T752 114 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 CST9Q5W186 159 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 TRNP1Q6NT89 227 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 FAM71AQ8IYT1 594 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 CCDC170Q8IYT3 715 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 C7orf61Q8IZ16 206 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 MFSD2AQ8NA29 543 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 CCDC112Q8NEF3 446 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 PIGOQ8TEQ8 1089 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 KAT5Q92993 513 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 ERO1AQ96HE7 468 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 LXNQ9BS40 222 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 AARSD1Q9BTE6 412 aaKnown RBP2.51□□□□□ -2.01
VPS54-202ENST00000354504 CCDC94Q9BW85 323 aaPredicted RBP2.51□□□□□ -2.01
VPS54-202ENST00000354504 HDAC8Q9BY41 377 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 XYLT2Q9H1B5 865 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 DUSP15Q9H1R2 295 aaPredicted RBP2.51□□□□□ -2.01
VPS54-202ENST00000354504 ADAM7Q9H2U9 754 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 MLXIPQ9HAP2 919 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 VAT1LQ9HCJ6 419 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 PANK4Q9NVE7 773 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 TRMT1Q9NXH9 659 aaKnown RBP2.51□□□□□ -2.01
VPS54-202ENST00000354504 STK32BQ9NY57 414 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 SMARCAL1Q9NZC9 954 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 CEP72Q9P209 647 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 CNOT7Q9UIV1 285 aaKnown RBP2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms