RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 A0A1W2PQJ5 194 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 EPOPA6NHQ4 379 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 E5RJQ4 531 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 TEX28O15482 410 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 ARHGAP6O43182 974 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 RFPL2O75678 378 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 CNPP09543 421 aaKnown RBP9.74□□□□□ -0.85
USP4-202ENST00000351842 GJA1P17302 382 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 RRM1P23921 792 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 BMPR1AP36894 532 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 GALCP54803 685 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 CDR2Q01850 454 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 ADIGQ0VDE8 80 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 ENOSF1Q7L5Y1 443 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 ERICH1Q86X53 443 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 CPNE8Q86YQ8 564 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 TMEM174Q8WUU8 243 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 UROC1Q96N76 676 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 CPXM1Q96SM3 734 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 LRRC4Q9HBW1 653 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 CYTH4Q9UIA0 394 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 NAGPAQ9UK23 515 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 NOCTQ9UK39 431 aaKnown RBP9.74□□□□□ -0.85
USP4-202ENST00000351842 PPP2R2CQ9Y2T4 447 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.74□□□□□ -0.85
USP4-202ENST00000351842 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.74□□□□□ -0.85
USP4-202ENST00000351842 VGLL3A8MV65 326 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 O00370 1275 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 ENC1O14682 589 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 CCDC175P0C221 793 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 USP17L7P0C7H9 530 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 FAM200BP0CF97 657 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 LHX1P48742 406 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 ATP11AP98196 1134 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 ROR1Q01973 937 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 TAP1Q03518 808 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 FIGNQ5HY92 759 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 DCUN1D2Q6PH85 259 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 GPRIN1Q7Z2K8 1008 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 PIGZQ86VD9 579 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 CMTR2Q8IYT2 770 aaKnown RBP9.74□□□□□ -0.85
USP4-202ENST00000351842 TOP6BLQ8N6T0 577 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 CTNNBL1Q8WYA6 563 aaPredicted RBP9.74□□□□□ -0.85
USP4-202ENST00000351842 TIFAQ96CG3 184 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 ACSF2Q96CM8 615 aaPredicted RBP9.74□□□□□ -0.85
USP4-202ENST00000351842 ARHGEF26Q96DR7 871 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 CYP3A43Q9HB55 503 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 GDAP2Q9NXN4 497 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 AIPL1Q9NZN9 384 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 PCDHA13Q9Y5I0 950 aa9.74□□□□□ -0.85
USP4-202ENST00000351842 FNDC1Q4ZHG4 1894 aaPredicted RBP9.73□□□□□ -0.85
USP4-202ENST00000351842 WDR27A2RRH5 827 aa9.73□□□□□ -0.85
USP4-202ENST00000351842 LPXNO60711 386 aa9.73□□□□□ -0.85
USP4-202ENST00000351842 MOCS3O95396 460 aa9.73□□□□□ -0.85
USP4-202ENST00000351842 SLC8A3P57103 927 aa9.73□□□□□ -0.85
USP4-202ENST00000351842 FAM35AQ86V20 835 aa9.73□□□□□ -0.85
USP4-202ENST00000351842 SLC22A17Q8WUG5 538 aa9.73□□□□□ -0.85
USP4-202ENST00000351842 SLITRK6Q9H5Y7 841 aa9.73□□□□□ -0.85
USP4-202ENST00000351842 GON4LQ3T8J9 2241 aa9.73□□□□□ -0.85
USP4-202ENST00000351842 BPIFB4P59827 614 aa9.73□□□□□ -0.85
USP4-202ENST00000351842 MESDQ14696 234 aa9.73□□□□□ -0.85
USP4-202ENST00000351842 SLC18A3Q16572 532 aa9.73□□□□□ -0.85
USP4-202ENST00000351842 INTS6LQ5JSJ4 861 aaKnown RBP9.73□□□□□ -0.85
USP4-202ENST00000351842 FAM102AQ5T9C2 384 aaPredicted RBP9.73□□□□□ -0.85
USP4-202ENST00000351842 SIX6OS1Q8N1H7 587 aa9.73□□□□□ -0.85
USP4-202ENST00000351842 SLC7A14Q8TBB6 771 aa9.73□□□□□ -0.85
USP4-202ENST00000351842 TGS1Q96RS0 853 aaKnown RBP9.73□□□□□ -0.85
USP4-202ENST00000351842 KLHL11Q9NVR0 708 aa9.73□□□□□ -0.85
USP4-202ENST00000351842 CNOT8Q9UFF9 292 aaKnown RBP9.73□□□□□ -0.85
USP4-202ENST00000351842 PCDHB8Q9UN66 801 aa9.73□□□□□ -0.85
USP4-202ENST00000351842 REXO2Q9Y3B8 237 aaKnown RBP9.73□□□□□ -0.85
USP4-202ENST00000351842 UQCRHLA0A096LP55 91 aa9.73□□□□□ -0.85
USP4-202ENST00000351842 UQCRHP07919 91 aa9.73□□□□□ -0.85
USP4-202ENST00000351842 HMBSP08397 361 aa9.73□□□□□ -0.85
USP4-202ENST00000351842 H2AFZP0C0S5 128 aa9.73□□□□□ -0.85
USP4-202ENST00000351842 GGCXP38435 758 aa9.73□□□□□ -0.85
USP4-202ENST00000351842 NRIP1P48552 1158 aa9.73□□□□□ -0.85
USP4-202ENST00000351842 KIF5AQ12840 1032 aa9.73□□□□□ -0.85
USP4-202ENST00000351842 PTPN20Q4JDL3 420 aa9.73□□□□□ -0.85
USP4-202ENST00000351842 FAM182AQ5T1J6 154 aa9.73□□□□□ -0.85
USP4-202ENST00000351842 TMC5Q6UXY8 1006 aa9.73□□□□□ -0.85
USP4-202ENST00000351842 H2AFVQ71UI9 128 aa9.73□□□□□ -0.85
USP4-202ENST00000351842 TMEM35BQ8NCS4 154 aa9.73□□□□□ -0.85
USP4-202ENST00000351842 CCDC112Q8NEF3 446 aa9.73□□□□□ -0.85
USP4-202ENST00000351842 NUCKS1Q9H1E3 243 aaKnown RBP9.73□□□□□ -0.85
USP4-202ENST00000351842 TMEM51Q9NW97 253 aa9.73□□□□□ -0.85
USP4-202ENST00000351842 RNF216Q9NWF9 866 aaPredicted RBP9.73□□□□□ -0.85
USP4-202ENST00000351842 ADGRG1Q9Y653 693 aa9.73□□□□□ -0.85
USP4-202ENST00000351842 CCL16O15467 120 aa9.72□□□□□ -0.85
USP4-202ENST00000351842 FTCDO95954 541 aa9.72□□□□□ -0.85
USP4-202ENST00000351842 SOD2P04179 222 aa9.72□□□□□ -0.85
USP4-202ENST00000351842 VDRP11473 427 aa9.72□□□□□ -0.85
USP4-202ENST00000351842 GNG11P61952 73 aa9.72□□□□□ -0.85
USP4-202ENST00000351842 SCYL2Q6P3W7 929 aa9.72□□□□□ -0.85
USP4-202ENST00000351842 ANKS3Q6ZW76 656 aa9.72□□□□□ -0.85
USP4-202ENST00000351842 ADGRD2Q7Z7M1 963 aa9.72□□□□□ -0.85
USP4-202ENST00000351842 BHMTQ93088 406 aa9.72□□□□□ -0.85
USP4-202ENST00000351842 MCEEQ96PE7 176 aa9.72□□□□□ -0.85
USP4-202ENST00000351842 CLSTN3Q9BQT9 956 aa9.72□□□□□ -0.85
USP4-202ENST00000351842 NACA2Q9H009 215 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms