RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 SYNJ2BP-COX16A0A087WUM0 186 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 KRT87PA6NCN2 255 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 AP1G2O75843 785 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 CCDC166P0CW27 439 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 HADHAP40939 763 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 AP1S2P56377 157 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 GRAPQ13588 217 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 TRIP13Q15645 432 aaPredicted RBP6.67□□□□□ -1.34
VPS35-201ENST00000299138 FAM47AQ5JRC9 791 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 PLEKHA7Q6IQ23 1121 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 GLYCTKQ8IVS8 523 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 MICALL2Q8IY33 904 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 RDH13Q8NBN7 331 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 GRAPLQ8TC17 118 aaPredicted RBP6.67□□□□□ -1.34
VPS35-201ENST00000299138 UBASH3BQ8TF42 649 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 DLG3Q92796 817 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 ERP27Q96DN0 273 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 ZNF184Q99676 751 aaPredicted RBP6.67□□□□□ -1.34
VPS35-201ENST00000299138 BHMT2Q9H2M3 363 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 CDC42EP4Q9H3Q1 356 aaKnown RBP6.67□□□□□ -1.34
VPS35-201ENST00000299138 PCDH9Q9HC56 1237 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 SEC31BQ9NQW1 1179 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 COX16Q9P0S2 106 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 PIK3CDO00329 1044 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 PFDN6O15212 129 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 STAM2O75886 525 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 PRLP01236 227 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 FAM200BP0CF97 657 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 IFNA8P32881 189 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 KPNA2P52292 529 aaKnown RBP6.67□□□□□ -1.34
VPS35-201ENST00000299138 ARCQ7LC44 396 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 POLNQ7Z5Q5 900 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 RBM17Q96I25 401 aaKnown RBP6.67□□□□□ -1.34
VPS35-201ENST00000299138 BTBD10Q9BSF8 475 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 TRPC7Q9HCX4 862 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 CYP26B1Q9NR63 512 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 NARFQ9UHQ1 456 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 GGA1Q9UJY5 639 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 PRELID1Q9Y255 219 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 SLIT2O94813 1529 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 WNT7AO00755 349 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 H2AFYO75367 372 aaKnown RBP6.67□□□□□ -1.34
VPS35-201ENST00000299138 ECHS1P30084 290 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 TMPRSS15P98073 1019 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 TAF5Q15542 800 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 TMEM179Q6ZVK1 233 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 PRMT1Q99873 361 aaKnown RBP6.67□□□□□ -1.34
VPS35-201ENST00000299138 ZCWPW1Q9H0M4 648 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 ARHGEF10LQ9HCE6 1279 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 TIMMDC1Q9NPL8 285 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 IVNS1ABPQ9Y6Y0 642 aa6.67□□□□□ -1.34
VPS35-201ENST00000299138 TMEM247A6NEH6 219 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 DDX3YO15523 660 aaKnown RBP6.66□□□□□ -1.34
VPS35-201ENST00000299138 PLEKP08567 350 aaPredicted RBP6.66□□□□□ -1.34
VPS35-201ENST00000299138 DNAJB2P25686 324 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 FKBP1AP62942 108 aaKnown RBP6.66□□□□□ -1.34
VPS35-201ENST00000299138 C1QBPQ07021 282 aaKnown RBP6.66□□□□□ -1.34
VPS35-201ENST00000299138 FCHO2Q0JRZ9 810 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 EARS2Q5JPH6 523 aaKnown RBP6.66□□□□□ -1.34
VPS35-201ENST00000299138 AARS2Q5JTZ9 985 aaKnown RBP6.66□□□□□ -1.34
VPS35-201ENST00000299138 HHIPL2Q6UWX4 724 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 MICU2Q8IYU8 434 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 TCAIMQ8N3R3 496 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 MKL1Q969V6 931 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 TRIM45Q9H8W5 580 aaPredicted RBP6.66□□□□□ -1.34
VPS35-201ENST00000299138 ANKEF1Q9NU02 776 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 MKS1Q9NXB0 559 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 ARFGEF2Q9Y6D5 1785 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 BACH1O14867 736 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 PROSCO94903 275 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 RARAP10276 462 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 PRELPP51888 382 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 EFTUD2Q15029 972 aaKnown RBP eCLIP6.66□□□□□ -1.34
VPS35-201ENST00000299138 OCLNQ16625 522 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 ODR4Q5SWX8 454 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 PRELID2Q8N945 189 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 SPIRE2Q8WWL2 714 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 NMD3Q96D46 503 aaKnown RBP6.66□□□□□ -1.34
VPS35-201ENST00000299138 REXO4Q9GZR2 422 aaKnown RBP6.66□□□□□ -1.34
VPS35-201ENST00000299138 KCNQ5Q9NR82 932 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 NUP188Q5SRE5 1749 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 PIPSLA2A3N6 862 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 BTN3A3O00478 584 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 GAS7O60861 476 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 ABL1P00519 1130 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 PRDX6P30041 224 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 CLEC16AQ2KHT3 1053 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 ACMSDQ8TDX5 336 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 ARHGEF1Q92888 912 aaKnown RBP6.66□□□□□ -1.34
VPS35-201ENST00000299138 KIFC1Q9BW19 673 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 TBCCD1Q9NVR7 557 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 ATXN10Q9UBB4 475 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 SUN2Q9UH99 717 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 SAP30BPQ9UHR5 308 aaKnown RBP6.66□□□□□ -1.34
VPS35-201ENST00000299138 H3BNX3 289 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 S100A1P23297 94 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 SOX11P35716 441 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 GYG1P46976 350 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 STILQ15468 1287 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 MAPK11Q15759 364 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms