RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 ZNF699Q32M78 642 aa16.02■□□□□ 0.16
SHH-201ENST00000297261 GPD1LQ8N335 351 aa16.02■□□□□ 0.16
SHH-201ENST00000297261 CATSPER1Q8NEC5 780 aa16.02■□□□□ 0.16
SHH-201ENST00000297261 CMTM5Q96DZ9 223 aa16.02■□□□□ 0.16
SHH-201ENST00000297261 FAM49AQ9H0Q0 323 aaPredicted RBP16.02■□□□□ 0.16
SHH-201ENST00000297261 RBAKQ9NYW8 714 aaPredicted RBP16.02■□□□□ 0.16
SHH-201ENST00000297261 SALL4Q9UJQ4 1053 aa16.02■□□□□ 0.16
SHH-201ENST00000297261 CLPTM1O96005 669 aa16.02■□□□□ 0.15
SHH-201ENST00000297261 CASP5P51878 434 aa16.02■□□□□ 0.15
SHH-201ENST00000297261 COPAP53621 1224 aa16.02■□□□□ 0.15
SHH-201ENST00000297261 GFM2Q969S9 779 aaKnown RBP16.02■□□□□ 0.15
SHH-201ENST00000297261 PPCSQ9HAB8 311 aa16.02■□□□□ 0.15
SHH-201ENST00000297261 KIAA1586Q9HCI6 787 aa16.02■□□□□ 0.15
SHH-201ENST00000297261 CES2O00748 559 aa16.02■□□□□ 0.15
SHH-201ENST00000297261 KDM1AO60341 852 aa16.02■□□□□ 0.15
SHH-201ENST00000297261 SLC25A27O95847 323 aa16.02■□□□□ 0.15
SHH-201ENST00000297261 BGNP21810 368 aa16.02■□□□□ 0.15
SHH-201ENST00000297261 RRM1P23921 792 aa16.02■□□□□ 0.15
SHH-201ENST00000297261 HEATR6Q6AI08 1181 aaKnown RBP16.02■□□□□ 0.15
SHH-201ENST00000297261 C1orf131Q8NDD1 294 aaKnown RBP16.02■□□□□ 0.15
SHH-201ENST00000297261 RDM1Q8NG50 284 aa16.02■□□□□ 0.15
SHH-201ENST00000297261 SPATA18Q8TC71 538 aa16.02■□□□□ 0.15
SHH-201ENST00000297261 OLFML3Q9NRN5 406 aa16.02■□□□□ 0.15
SHH-201ENST00000297261 AGO2Q9UKV8 859 aaKnown RBP16.02■□□□□ 0.15
SHH-201ENST00000297261 CORO1CQ9ULV4 474 aaPredicted RBP16.02■□□□□ 0.15
SHH-201ENST00000297261 CCDC88AQ3V6T2 1871 aa16.01■□□□□ 0.15
SHH-201ENST00000297261 PIK3R2O00459 728 aa16.01■□□□□ 0.15
SHH-201ENST00000297261 ITGB5P18084 799 aa16.01■□□□□ 0.15
SHH-201ENST00000297261 EFTUD2Q15029 972 aaKnown RBP eCLIP16.01■□□□□ 0.156e-7■■■□□ 16.6
SHH-201ENST00000297261 PKN2Q16513 984 aaKnown RBP16.01■□□□□ 0.15
SHH-201ENST00000297261 SIAH1Q8IUQ4 282 aa16.01■□□□□ 0.15
SHH-201ENST00000297261 FAM71DQ8N9W8 422 aa16.01■□□□□ 0.15
SHH-201ENST00000297261 CKAP2Q8WWK9 683 aa16.01■□□□□ 0.15
SHH-201ENST00000297261 SPIRE2Q8WWL2 714 aa16.01■□□□□ 0.15
SHH-201ENST00000297261 POP1Q99575 1024 aaKnown RBP16.01■□□□□ 0.15
SHH-201ENST00000297261 CCDC134Q9H6E4 229 aa16.01■□□□□ 0.15
SHH-201ENST00000297261 SLCO1B3Q9NPD5 702 aa16.01■□□□□ 0.15
SHH-201ENST00000297261 ASB14A6NK59 587 aa16.01■□□□□ 0.15
SHH-201ENST00000297261 SPATA31C1P0DKV0 1188 aa16.01■□□□□ 0.15
SHH-201ENST00000297261 TBXAS1P24557 533 aaPredicted RBP16.01■□□□□ 0.15
SHH-201ENST00000297261 RARRES1P49788 294 aa16.01■□□□□ 0.15
SHH-201ENST00000297261 AQP5P55064 265 aa16.01■□□□□ 0.15
SHH-201ENST00000297261 ROR2Q01974 943 aaKnown RBP16.01■□□□□ 0.15
SHH-201ENST00000297261 Q3C1V9 767 aa16.01■□□□□ 0.15
SHH-201ENST00000297261 FAXCQ5TGI0 409 aa16.01■□□□□ 0.15
SHH-201ENST00000297261 RNF149Q8NC42 400 aa16.01■□□□□ 0.15
SHH-201ENST00000297261 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.01■□□□□ 0.15
SHH-201ENST00000297261 KIAA0391O15091 583 aaKnown RBP16.01■□□□□ 0.15
SHH-201ENST00000297261 EXOC3L1Q86VI1 746 aa16.01■□□□□ 0.15
SHH-201ENST00000297261 C20orf96Q9NUD7 363 aaPredicted RBP16.01■□□□□ 0.15
SHH-201ENST00000297261 NINJ2Q9NZG7 142 aa16.01■□□□□ 0.15
SHH-201ENST00000297261 M0QZ92 97 aa16■□□□□ 0.15
SHH-201ENST00000297261 MAP4P27816 1152 aaKnown RBP16■□□□□ 0.15
SHH-201ENST00000297261 KCNA1Q09470 495 aa16■□□□□ 0.15
SHH-201ENST00000297261 LRRC6Q86X45 466 aa16■□□□□ 0.15
SHH-201ENST00000297261 SLC35C1Q96A29 364 aa16■□□□□ 0.15
SHH-201ENST00000297261 PAFAH2Q99487 392 aa16■□□□□ 0.15
SHH-201ENST00000297261 BTBD10Q9BSF8 475 aa16■□□□□ 0.15
SHH-201ENST00000297261 UBXN6Q9BZV1 441 aa16■□□□□ 0.15
SHH-201ENST00000297261 FNDC3AQ9Y2H6 1198 aaKnown RBP16■□□□□ 0.15
SHH-201ENST00000297261 FAM200BP0CF97 657 aa16■□□□□ 0.15
SHH-201ENST00000297261 SOX11P35716 441 aa16■□□□□ 0.15
SHH-201ENST00000297261 FBXO36Q8NEA4 188 aa16■□□□□ 0.15
SHH-201ENST00000297261 CBWD1Q9BRT8 395 aa16■□□□□ 0.15
SHH-201ENST00000297261 ZCWPW1Q9H0M4 648 aa16■□□□□ 0.15
SHH-201ENST00000297261 SPC25Q9HBM1 224 aa16■□□□□ 0.15
SHH-201ENST00000297261 FCHO1O14526 889 aa16■□□□□ 0.15
SHH-201ENST00000297261 SOX10P56693 466 aa16■□□□□ 0.15
SHH-201ENST00000297261 CNTN2Q02246 1040 aa16■□□□□ 0.15
SHH-201ENST00000297261 FLOT2Q14254 428 aa16■□□□□ 0.15
SHH-201ENST00000297261 MTFR1Q15390 333 aa16■□□□□ 0.15
SHH-201ENST00000297261 ZNF568Q3ZCX4 644 aa16■□□□□ 0.15
SHH-201ENST00000297261 ACAD10Q6JQN1 1059 aa16■□□□□ 0.15
SHH-201ENST00000297261 C4orf19Q8IY42 314 aa16■□□□□ 0.15
SHH-201ENST00000297261 SCFD2Q8WU76 684 aa16■□□□□ 0.15
SHH-201ENST00000297261 GMLQ99445 158 aa16■□□□□ 0.15
SHH-201ENST00000297261 P2RX7Q99572 595 aaKnown RBP16■□□□□ 0.15
SHH-201ENST00000297261 SPATC1LQ9H0A9 340 aa16■□□□□ 0.15
SHH-201ENST00000297261 TSC22D4Q9Y3Q8 395 aa16■□□□□ 0.15
SHH-201ENST00000297261 CCL15-CCL14A0A0B4J2E2 113 aa16■□□□□ 0.15
SHH-201ENST00000297261 E7ENQ6 273 aa16■□□□□ 0.15
SHH-201ENST00000297261 AHCYL1O43865 530 aa16■□□□□ 0.15
SHH-201ENST00000297261 SDC4P31431 198 aa16■□□□□ 0.15
SHH-201ENST00000297261 HNRNPH3P31942 346 aaKnown RBP16■□□□□ 0.15
SHH-201ENST00000297261 KPNA2P52292 529 aaKnown RBP16■□□□□ 0.15
SHH-201ENST00000297261 CCL15Q16663 113 aa16■□□□□ 0.15
SHH-201ENST00000297261 RNF135Q8IUD6 432 aa16■□□□□ 0.15
SHH-201ENST00000297261 ATP6V1E2Q96A05 226 aa16■□□□□ 0.15
SHH-201ENST00000297261 CLMNQ96JQ2 1002 aa16■□□□□ 0.15
SHH-201ENST00000297261 ZNF184Q99676 751 aaPredicted RBP16■□□□□ 0.15
SHH-201ENST00000297261 TMEM121Q9BTD3 319 aa16■□□□□ 0.15
SHH-201ENST00000297261 AP5M1Q9H0R1 490 aa16■□□□□ 0.15
SHH-201ENST00000297261 DHX35Q9H5Z1 703 aaKnown RBP16■□□□□ 0.15
SHH-201ENST00000297261 NDUFA13Q9P0J0 144 aa16■□□□□ 0.15
SHH-201ENST00000297261 ORC6Q9Y5N6 252 aa16■□□□□ 0.15
SHH-201ENST00000297261 GRIN2DO15399 1336 aa15.99■□□□□ 0.15
SHH-201ENST00000297261 MAP3K6O95382 1288 aa15.99■□□□□ 0.15
SHH-201ENST00000297261 PECAM1P16284 738 aaPredicted RBP15.99■□□□□ 0.15
SHH-201ENST00000297261 GSTT1P30711 240 aa15.99■□□□□ 0.15
SHH-201ENST00000297261 PTGER2P43116 358 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms