RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 ZBTB22O15209 634 aa11.9□□□□□ -0.5
USP53-201ENST00000274030 CLASP2O75122 1294 aaKnown RBP11.9□□□□□ -0.5
USP53-201ENST00000274030 KCNK10P57789 538 aa11.9□□□□□ -0.5
USP53-201ENST00000274030 PLOD1Q02809 727 aaPredicted RBP11.9□□□□□ -0.5
USP53-201ENST00000274030 PTK6Q13882 451 aa11.9□□□□□ -0.5
USP53-201ENST00000274030 SLC47A2Q86VL8 602 aa11.9□□□□□ -0.5
USP53-201ENST00000274030 SLC20A1Q8WUM9 679 aa11.9□□□□□ -0.5
USP53-201ENST00000274030 CYP4F12Q9HCS2 524 aa11.9□□□□□ -0.5
USP53-201ENST00000274030 SELENONQ9NZV5 590 aa11.9□□□□□ -0.5
USP53-201ENST00000274030 SPAG6O75602 509 aa11.9□□□□□ -0.5
USP53-201ENST00000274030 MAPK7Q13164 816 aa11.9□□□□□ -0.5
USP53-201ENST00000274030 DEFB132Q7Z7B7 95 aa11.9□□□□□ -0.5
USP53-201ENST00000274030 LRRC34Q8IZ02 419 aa11.9□□□□□ -0.5
USP53-201ENST00000274030 PPP2R3CQ969Q6 453 aa11.9□□□□□ -0.5
USP53-201ENST00000274030 TMEM121Q9BTD3 319 aa11.9□□□□□ -0.5
USP53-201ENST00000274030 UNKQ9C0B0 810 aaKnown RBP11.9□□□□□ -0.5
USP53-201ENST00000274030 CARD9Q9H257 536 aa11.9□□□□□ -0.5
USP53-201ENST00000274030 ZNF556Q9HAH1 456 aa11.9□□□□□ -0.5
USP53-201ENST00000274030 UBP1Q9NZI7 540 aa11.9□□□□□ -0.5
USP53-201ENST00000274030 IQGAP3Q86VI3 1631 aa11.9□□□□□ -0.5
USP53-201ENST00000274030 FAM205AQ6ZU69 1335 aa11.9□□□□□ -0.5
USP53-201ENST00000274030 FAM172AQ8WUF8 416 aa11.9□□□□□ -0.5
USP53-201ENST00000274030 SYN2Q92777 582 aaPredicted RBP11.9□□□□□ -0.5
USP53-201ENST00000274030 NMRK2Q9NPI5 230 aa11.9□□□□□ -0.5
USP53-201ENST00000274030 PSD3Q9NYI0 1048 aa11.9□□□□□ -0.5
USP53-201ENST00000274030 CYB561D2O14569 222 aa11.9□□□□□ -0.5
USP53-201ENST00000274030 ODC1P11926 461 aa11.9□□□□□ -0.5
USP53-201ENST00000274030 RFX3P48380 749 aa11.9□□□□□ -0.5
USP53-201ENST00000274030 MTFR1Q15390 333 aa11.9□□□□□ -0.5
USP53-201ENST00000274030 CATSPER1Q8NEC5 780 aa11.9□□□□□ -0.5
USP53-201ENST00000274030 LACRTQ9GZZ8 138 aa11.9□□□□□ -0.5
USP53-201ENST00000274030 MTIF3Q9H2K0 278 aaKnown RBP11.9□□□□□ -0.5
USP53-201ENST00000274030 SLC26A4O43511 780 aa11.9□□□□□ -0.51
USP53-201ENST00000274030 KCNA3P22001 575 aa11.9□□□□□ -0.51
USP53-201ENST00000274030 NUDT2P50583 147 aa11.9□□□□□ -0.51
USP53-201ENST00000274030 MAP3K7CLP57077 242 aa11.9□□□□□ -0.51
USP53-201ENST00000274030 OTUD4Q01804 1114 aaKnown RBP11.9□□□□□ -0.51
USP53-201ENST00000274030 WASHC5Q12768 1159 aa11.9□□□□□ -0.51
USP53-201ENST00000274030 DENND1BQ6P3S1 775 aa11.9□□□□□ -0.51
USP53-201ENST00000274030 ZSWIM2Q8NEG5 633 aa11.9□□□□□ -0.51
USP53-201ENST00000274030 KAZALD1Q96I82 304 aa11.9□□□□□ -0.51
USP53-201ENST00000274030 WWOXQ9NZC7 414 aa11.9□□□□□ -0.51
USP53-201ENST00000274030 CDY2AQ9Y6F7 541 aa11.9□□□□□ -0.51
USP53-201ENST00000274030 CDY1Q9Y6F8 540 aa11.9□□□□□ -0.51
USP53-201ENST00000274030 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.89□□□□□ -0.51
USP53-201ENST00000274030 CCT8L1PA6NM43 557 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 ZC3H11AO75152 810 aaKnown RBP eCLIP11.89□□□□□ -0.51
USP53-201ENST00000274030 ZNF189O75820 626 aaPredicted RBP11.89□□□□□ -0.51
USP53-201ENST00000274030 AKAP3O75969 853 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 LRG1P02750 347 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 STAG3L1P0CL83 205 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 PNPLA4P41247 253 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 MYL6P60660 151 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 SNRPFP62306 86 aaKnown RBP11.89□□□□□ -0.51
USP53-201ENST00000274030 PSMC6P62333 389 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 ZNF177Q13360 481 aaPredicted RBP11.89□□□□□ -0.51
USP53-201ENST00000274030 TRIM60Q495X7 471 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 DEPDC1Q5TB30 811 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 PRUNE1Q86TP1 453 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 ADCK1Q86TW2 530 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 MIER2Q8N344 545 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 TBC1D4O60343 1298 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 ASS1P00966 412 aaKnown RBP11.89□□□□□ -0.51
USP53-201ENST00000274030 SERPINB5P36952 375 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 MAP3K10Q02779 954 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 FAM83EQ2M2I3 478 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 XRRA1Q6P2D8 792 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 LRRC6Q86X45 466 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 SLC44A2Q8IWA5 706 aaPredicted RBP11.89□□□□□ -0.51
USP53-201ENST00000274030 AGBL3Q8NEM8 1001 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 ATP8B4Q8TF62 1192 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 TMEM169Q96HH4 297 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 PLEKHA8Q96JA3 519 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 VPS50Q96JG6 964 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 THUMPD3Q9BV44 507 aaKnown RBP11.89□□□□□ -0.51
USP53-201ENST00000274030 C6orf203Q9P0P8 240 aaPredicted RBP11.89□□□□□ -0.51
USP53-201ENST00000274030 TIMM13Q9Y5L4 95 aaPredicted RBP11.89□□□□□ -0.51
USP53-201ENST00000274030 WEE1P30291 646 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 RAP1GDS1P52306 607 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 LAMB3Q13751 1172 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 PTGISQ16647 500 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 NBPF12Q5TAG4 269 aaPredicted RBP11.89□□□□□ -0.51
USP53-201ENST00000274030 C11orf63Q6NUN7 778 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 TMEM154Q6P9G4 183 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 RNF180Q86T96 592 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 DAGLBQ8NCG7 672 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 SUPT20HL2P0C7V6 817 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 TRPC1P48995 793 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 PCYT1AP49585 367 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 ATN1P54259 1190 aaPredicted RBP11.89□□□□□ -0.51
USP53-201ENST00000274030 HORMAD1Q86X24 394 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 PLD3Q8IV08 490 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 CYP2W1Q8TAV3 490 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 JADE3Q92613 823 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 FBXO32Q969P5 355 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 TUBGCP3Q96CW5 907 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 HES6Q96HZ4 224 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 NSL1Q96IY1 281 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 CNDP1Q96KN2 507 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 CEP41Q9BYV8 373 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms