RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 MFSD5Q6N075 450 aa17.45■□□□□ 0.38
VPS54-201ENST00000272322 ZPBP2Q6X784 338 aa17.45■□□□□ 0.38
VPS54-201ENST00000272322 ARHGEF18Q6ZSZ5 1173 aa17.45■□□□□ 0.38
VPS54-201ENST00000272322 FAM228AQ86W67 206 aa17.45■□□□□ 0.38
VPS54-201ENST00000272322 FBF1Q8TES7 1133 aa17.45■□□□□ 0.38
VPS54-201ENST00000272322 KLK14Q9P0G3 267 aa17.45■□□□□ 0.38
VPS54-201ENST00000272322 RNF181Q9P0P0 153 aa17.45■□□□□ 0.38
VPS54-201ENST00000272322 KLHL14Q9P2G3 628 aa17.45■□□□□ 0.38
VPS54-201ENST00000272322 MYO18AQ92614 2054 aaKnown RBP17.45■□□□□ 0.38
VPS54-201ENST00000272322 MCM3APO60318 1980 aa17.45■□□□□ 0.38
VPS54-201ENST00000272322 C2orf71A6NGG8 1288 aa17.45■□□□□ 0.38
VPS54-201ENST00000272322 FAM47DPA6NHR8 397 aa17.45■□□□□ 0.38
VPS54-201ENST00000272322 ICAM3P32942 547 aa17.45■□□□□ 0.38
VPS54-201ENST00000272322 NDST1P52848 882 aa17.45■□□□□ 0.38
VPS54-201ENST00000272322 RABGGTBP53611 331 aa17.45■□□□□ 0.38
VPS54-201ENST00000272322 MXD4Q14582 209 aaPredicted RBP17.45■□□□□ 0.38
VPS54-201ENST00000272322 CENPUQ71F23 418 aa17.45■□□□□ 0.38
VPS54-201ENST00000272322 ZCCHC9Q8N567 271 aaKnown RBP17.45■□□□□ 0.38
VPS54-201ENST00000272322 NDRG1Q92597 394 aaKnown RBP17.45■□□□□ 0.38
VPS54-201ENST00000272322 CENPTQ96BT3 561 aa17.45■□□□□ 0.38
VPS54-201ENST00000272322 SGSM3Q96HU1 749 aa17.45■□□□□ 0.38
VPS54-201ENST00000272322 HPDLQ96IR7 371 aa17.45■□□□□ 0.38
VPS54-201ENST00000272322 CEP41Q9BYV8 373 aa17.45■□□□□ 0.38
VPS54-201ENST00000272322 TMEM134Q9H6X4 195 aa17.45■□□□□ 0.38
VPS54-201ENST00000272322 XPO7Q9UIA9 1087 aaKnown RBP17.45■□□□□ 0.38
VPS54-201ENST00000272322 FER1L6Q2WGJ9 1857 aa17.44■□□□□ 0.38
VPS54-201ENST00000272322 ACKR2O00590 384 aa17.44■□□□□ 0.38
VPS54-201ENST00000272322 TMEM63AO94886 807 aa17.44■□□□□ 0.38
VPS54-201ENST00000272322 TARSP26639 723 aaKnown RBP17.44■□□□□ 0.38
VPS54-201ENST00000272322 ATP5DP30049 168 aa17.44■□□□□ 0.38
VPS54-201ENST00000272322 PTPN11Q06124 597 aaPredicted RBP17.44■□□□□ 0.38
VPS54-201ENST00000272322 MGAT5Q09328 741 aa17.44■□□□□ 0.38
VPS54-201ENST00000272322 CCDC142Q17RM4 750 aa17.44■□□□□ 0.38
VPS54-201ENST00000272322 C3orf20Q8ND61 904 aa17.44■□□□□ 0.38
VPS54-201ENST00000272322 CKAP2Q8WWK9 683 aa17.44■□□□□ 0.38
VPS54-201ENST00000272322 ERP27Q96DN0 273 aa17.44■□□□□ 0.38
VPS54-201ENST00000272322 ACTR5Q9H9F9 607 aaPredicted RBP17.44■□□□□ 0.38
VPS54-201ENST00000272322 USP18Q9UMW8 372 aa17.44■□□□□ 0.38
VPS54-201ENST00000272322 ATP2A1O14983 1001 aa17.44■□□□□ 0.38
VPS54-201ENST00000272322 KDELR1P24390 212 aa17.44■□□□□ 0.38
VPS54-201ENST00000272322 ADRA1DP25100 572 aa17.44■□□□□ 0.38
VPS54-201ENST00000272322 GCAP28676 217 aa17.44■□□□□ 0.38
VPS54-201ENST00000272322 PIGHQ14442 188 aaPredicted RBP17.44■□□□□ 0.38
VPS54-201ENST00000272322 HADHQ16836 314 aaKnown RBP17.44■□□□□ 0.38
VPS54-201ENST00000272322 LVRNQ6Q4G3 990 aa17.44■□□□□ 0.38
VPS54-201ENST00000272322 IGDCC3Q8IVU1 814 aa17.44■□□□□ 0.38
VPS54-201ENST00000272322 KCNV2Q8TDN2 545 aa17.44■□□□□ 0.38
VPS54-201ENST00000272322 IGKV6D-21A0A0A0MT36 114 aa17.44■□□□□ 0.38
VPS54-201ENST00000272322 E2F8A0AVK6 867 aa17.44■□□□□ 0.38
VPS54-201ENST00000272322 TAC1P20366 129 aa17.44■□□□□ 0.38
VPS54-201ENST00000272322 ZNF132P52740 706 aa17.44■□□□□ 0.38
VPS54-201ENST00000272322 ELF3P78545 371 aaPredicted RBP17.44■□□□□ 0.38
VPS54-201ENST00000272322 SPDYCQ5MJ68 293 aa17.44■□□□□ 0.38
VPS54-201ENST00000272322 CGB2Q6NT52 195 aa17.44■□□□□ 0.38
VPS54-201ENST00000272322 ARMC9Q7Z3E5 817 aa17.44■□□□□ 0.38
VPS54-201ENST00000272322 SLC4A11Q8NBS3 891 aa17.44■□□□□ 0.38
VPS54-201ENST00000272322 RXFP2Q8WXD0 754 aa17.44■□□□□ 0.38
VPS54-201ENST00000272322 KIF12Q96FN5 646 aa17.44■□□□□ 0.38
VPS54-201ENST00000272322 VCPIP1Q96JH7 1222 aa17.44■□□□□ 0.38
VPS54-201ENST00000272322 NPHS2Q9NP85 383 aa17.44■□□□□ 0.38
VPS54-201ENST00000272322 SOCS7O14512 581 aa17.43■□□□□ 0.38
VPS54-201ENST00000272322 ARF4P18085 180 aaPredicted RBP17.43■□□□□ 0.38
VPS54-201ENST00000272322 TFE3P19532 575 aaPredicted RBP17.43■□□□□ 0.38
VPS54-201ENST00000272322 YARSP54577 528 aaKnown RBP17.43■□□□□ 0.38
VPS54-201ENST00000272322 GPX6P59796 221 aa17.43■□□□□ 0.38
VPS54-201ENST00000272322 STAT4Q14765 748 aa17.43■□□□□ 0.38
VPS54-201ENST00000272322 CPT1BQ92523 772 aa17.43■□□□□ 0.38
VPS54-201ENST00000272322 SLCO2A1Q92959 643 aa17.43■□□□□ 0.38
VPS54-201ENST00000272322 OPTNQ96CV9 577 aa17.43■□□□□ 0.38
VPS54-201ENST00000272322 PEBP4Q96S96 227 aa17.43■□□□□ 0.38
VPS54-201ENST00000272322 CACNG4Q9UBN1 327 aa17.43■□□□□ 0.38
VPS54-201ENST00000272322 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.43■□□□□ 0.38
VPS54-201ENST00000272322 PIGRP01833 764 aa17.43■□□□□ 0.38
VPS54-201ENST00000272322 F7P08709 466 aaPredicted RBP17.43■□□□□ 0.38
VPS54-201ENST00000272322 IL9RQ01113 521 aa17.43■□□□□ 0.38
VPS54-201ENST00000272322 MCL1Q07820 350 aa17.43■□□□□ 0.38
VPS54-201ENST00000272322 KRT81Q14533 505 aa17.43■□□□□ 0.38
VPS54-201ENST00000272322 ETNK1Q9HBU6 452 aa17.43■□□□□ 0.38
VPS54-201ENST00000272322 RAB6BQ9NRW1 208 aa17.43■□□□□ 0.38
VPS54-201ENST00000272322 KCNG1Q9UIX4 513 aa17.43■□□□□ 0.38
VPS54-201ENST00000272322 FGFR1P11362 822 aa17.42■□□□□ 0.38
VPS54-201ENST00000272322 YWHAEP62258 255 aaKnown RBP17.42■□□□□ 0.38
VPS54-201ENST00000272322 TTC17Q96AE7 1141 aa17.42■□□□□ 0.38
VPS54-201ENST00000272322 LENG1Q96BZ8 264 aaPredicted RBP17.42■□□□□ 0.38
VPS54-201ENST00000272322 SLC17A7Q9P2U7 560 aa17.42■□□□□ 0.38
VPS54-201ENST00000272322 HAO1Q9UJM8 370 aa17.42■□□□□ 0.38
VPS54-201ENST00000272322 TSPAN16Q9UKR8 245 aa17.42■□□□□ 0.38
VPS54-201ENST00000272322 A0A0G2JND7 137 aa17.42■□□□□ 0.38
VPS54-201ENST00000272322 NPTXRO95502 500 aa17.42■□□□□ 0.38
VPS54-201ENST00000272322 AKAP5P24588 427 aa17.42■□□□□ 0.38
VPS54-201ENST00000272322 ADORA2BP29275 332 aa17.42■□□□□ 0.38
VPS54-201ENST00000272322 CAV1Q03135 178 aa17.42■□□□□ 0.38
VPS54-201ENST00000272322 OASLQ15646 514 aaKnown RBP17.42■□□□□ 0.38
VPS54-201ENST00000272322 ACCSLQ4AC99 568 aa17.42■□□□□ 0.38
VPS54-201ENST00000272322 RNASEH2BQ5TBB1 312 aaKnown RBP17.42■□□□□ 0.38
VPS54-201ENST00000272322 XYLT1Q86Y38 959 aa17.42■□□□□ 0.38
VPS54-201ENST00000272322 ECHDC2Q86YB7 292 aa17.42■□□□□ 0.38
VPS54-201ENST00000272322 CLEC4CQ8WTT0 213 aa17.42■□□□□ 0.38
VPS54-201ENST00000272322 KDM4CQ9H3R0 1056 aa17.42■□□□□ 0.38
VPS54-201ENST00000272322 PHTF1Q9UMS5 762 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms