RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 STBD1O95210 358 aa12.16□□□□□ -0.46
VPS4A-201ENST00000254950 PTPN1P18031 435 aaKnown RBP12.16□□□□□ -0.46
VPS4A-201ENST00000254950 EIF3EP60228 445 aaKnown RBP12.16□□□□□ -0.46
VPS4A-201ENST00000254950 VSNL1P62760 191 aa12.16□□□□□ -0.46
VPS4A-201ENST00000254950 ROR1Q01973 937 aa12.16□□□□□ -0.46
VPS4A-201ENST00000254950 C1orf228Q6PIY5 440 aa12.16□□□□□ -0.46
VPS4A-201ENST00000254950 TADA2BQ86TJ2 420 aa12.16□□□□□ -0.46
VPS4A-201ENST00000254950 NT5DC3Q86UY8 548 aa12.16□□□□□ -0.46
VPS4A-201ENST00000254950 PLEKHO2Q8TD55 490 aa12.16□□□□□ -0.46
VPS4A-201ENST00000254950 ZNF296Q8WUU4 475 aaPredicted RBP12.16□□□□□ -0.46
VPS4A-201ENST00000254950 ZNF516Q92618 1163 aa12.16□□□□□ -0.46
VPS4A-201ENST00000254950 KLC2Q9H0B6 622 aa12.16□□□□□ -0.46
VPS4A-201ENST00000254950 GNEQ9Y223 722 aaKnown RBP12.16□□□□□ -0.46
VPS4A-201ENST00000254950 ZNF263O14978 683 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 KRT14P02533 472 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 CYBAP13498 195 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 TPI1P60174 286 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 YWHAGP61981 247 aaKnown RBP eCLIP12.15□□□□□ -0.46
VPS4A-201ENST00000254950 PDCLQ13371 301 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 FAM171A1Q5VUB5 890 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 SYDE1Q6ZW31 735 aaPredicted RBP12.15□□□□□ -0.46
VPS4A-201ENST00000254950 PHF13Q86YI8 300 aaPredicted RBP12.15□□□□□ -0.46
VPS4A-201ENST00000254950 ACTRT1Q8TDG2 376 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 SREK1Q8WXA9 508 aaKnown RBP12.15□□□□□ -0.46
VPS4A-201ENST00000254950 BORCS6Q96GS4 357 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 TRPV6Q9H1D0 765 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 PTCH2Q9Y6C5 1203 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 NCANO14594 1321 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 C2CD2LO14523 706 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 TTI1O43156 1089 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 CST8O60676 142 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 CAPN2P17655 700 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 SERPINB6P35237 376 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 HEATR6Q6AI08 1181 aaKnown RBP12.15□□□□□ -0.46
VPS4A-201ENST00000254950 TMEM192Q8IY95 271 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 PXYLP1Q8TE99 480 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 FAXDC2Q96IV6 333 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 ZNF512Q96ME7 567 aaPredicted RBP12.15□□□□□ -0.46
VPS4A-201ENST00000254950 TSEN34Q9BSV6 310 aaKnown RBP12.15□□□□□ -0.46
VPS4A-201ENST00000254950 APOBEC3GQ9HC16 384 aaKnown RBP12.15□□□□□ -0.46
VPS4A-201ENST00000254950 DDIT4Q9NX09 232 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 FLRT1Q9NZU1 646 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 COMMD10Q9Y6G5 202 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 ERICH4A6NGS2 130 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 GOLGA8KD6RF30 607 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 LCA5LO95447 670 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 PARNO95453 639 aaKnown RBP12.15□□□□□ -0.46
VPS4A-201ENST00000254950 CYP1A2P05177 515 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 SRGAP2BP0DMP2 458 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 TKTL1P51854 596 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 CENPCQ03188 943 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 BBS9Q3SYG4 887 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 EP400NLQ6ZTU2 488 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 CENPUQ71F23 418 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 ZC3H18Q86VM9 953 aaKnown RBP12.15□□□□□ -0.46
VPS4A-201ENST00000254950 FAM228AQ86W67 206 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 ARHGAP18Q8N392 663 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 TOP6BLQ8N6T0 577 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 SMARCD1Q96GM5 515 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 GOLGA2P5Q9HBQ8 144 aa12.15□□□□□ -0.46
VPS4A-201ENST00000254950 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.15□□□□□ -0.46
VPS4A-201ENST00000254950 DOCK1Q14185 1865 aa12.14□□□□□ -0.47
VPS4A-201ENST00000254950 M0QYT0 321 aa12.14□□□□□ -0.47
VPS4A-201ENST00000254950 CTIFO43310 598 aaKnown RBP12.14□□□□□ -0.47
VPS4A-201ENST00000254950 CYP3A5P20815 502 aa12.14□□□□□ -0.47
VPS4A-201ENST00000254950 RPL10AP62906 217 aaKnown RBP12.14□□□□□ -0.47
VPS4A-201ENST00000254950 BTG3Q14201 252 aaPredicted RBP12.14□□□□□ -0.47
VPS4A-201ENST00000254950 PCGF5Q86SE9 256 aa12.14□□□□□ -0.47
VPS4A-201ENST00000254950 CCDC63Q8NA47 563 aa12.14□□□□□ -0.47
VPS4A-201ENST00000254950 B3GALNT2Q8NCR0 500 aa12.14□□□□□ -0.47
VPS4A-201ENST00000254950 EXD1Q8NHP7 514 aa12.14□□□□□ -0.47
VPS4A-201ENST00000254950 FAM172AQ8WUF8 416 aa12.14□□□□□ -0.47
VPS4A-201ENST00000254950 FAF2Q96CS3 445 aa12.14□□□□□ -0.47
VPS4A-201ENST00000254950 ELOVL4Q9GZR5 314 aa12.14□□□□□ -0.47
VPS4A-201ENST00000254950 NSRP1Q9H0G5 558 aaKnown RBP12.14□□□□□ -0.47
VPS4A-201ENST00000254950 FAM124BQ9H5Z6 455 aaPredicted RBP12.14□□□□□ -0.47
VPS4A-201ENST00000254950 KLHL8Q9P2G9 620 aaPredicted RBP12.14□□□□□ -0.47
VPS4A-201ENST00000254950 TTC7AQ9ULT0 858 aaPredicted RBP12.14□□□□□ -0.47
VPS4A-201ENST00000254950 E5RJQ4 531 aa12.14□□□□□ -0.47
VPS4A-201ENST00000254950 ARVCFO00192 962 aa12.14□□□□□ -0.47
VPS4A-201ENST00000254950 VNN1O95497 513 aa12.14□□□□□ -0.47
VPS4A-201ENST00000254950 F9P00740 461 aa12.14□□□□□ -0.47
VPS4A-201ENST00000254950 AMHP03971 560 aa12.14□□□□□ -0.47
VPS4A-201ENST00000254950 CCDC130P13994 396 aa12.14□□□□□ -0.47
VPS4A-201ENST00000254950 GPS1Q13098 491 aa12.14□□□□□ -0.47
VPS4A-201ENST00000254950 ALS2CLQ60I27 953 aa12.14□□□□□ -0.47
VPS4A-201ENST00000254950 IFNLR1Q8IU57 520 aaPredicted RBP12.14□□□□□ -0.47
VPS4A-201ENST00000254950 PCDHB18PQ96TA0 734 aa12.14□□□□□ -0.47
VPS4A-201ENST00000254950 DLEC1Q9Y238 1755 aa12.14□□□□□ -0.47
VPS4A-201ENST00000254950 A6NNZ2 444 aa12.14□□□□□ -0.47
VPS4A-201ENST00000254950 H0YHG0 523 aa12.14□□□□□ -0.47
VPS4A-201ENST00000254950 RAD51CO43502 376 aa12.14□□□□□ -0.47
VPS4A-201ENST00000254950 URODP06132 367 aa12.14□□□□□ -0.47
VPS4A-201ENST00000254950 TUBB8Q3ZCM7 444 aa12.14□□□□□ -0.47
VPS4A-201ENST00000254950 DCLRE1AQ6PJP8 1040 aa12.14□□□□□ -0.47
VPS4A-201ENST00000254950 GSPT2Q8IYD1 628 aaKnown RBP12.14□□□□□ -0.47
VPS4A-201ENST00000254950 DNAAF3Q8N9W5 541 aa12.14□□□□□ -0.47
VPS4A-201ENST00000254950 FAM71BQ8TC56 605 aa12.14□□□□□ -0.47
VPS4A-201ENST00000254950 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.14□□□□□ -0.47
VPS4A-201ENST00000254950 HSFY1Q96LI6 401 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 107.7 ms