RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 C2orf15Q8WU43 125 aaKnown RBP12.47□□□□□ -0.41
CLN3-257ENST00000637110 CGRRF1Q99675 332 aa12.47□□□□□ -0.41
CLN3-257ENST00000637110 IER2Q9BTL4 223 aa12.47□□□□□ -0.41
CLN3-257ENST00000637110 PI4K2AQ9BTU6 479 aa12.47□□□□□ -0.41
CLN3-257ENST00000637110 ATXN3LQ9H3M9 355 aa12.47□□□□□ -0.41
CLN3-257ENST00000637110 GOLPH3LQ9H4A5 285 aa12.47□□□□□ -0.41
CLN3-257ENST00000637110 ZFP14Q9HCL3 533 aa12.47□□□□□ -0.41
CLN3-257ENST00000637110 AVENQ9NQS1 362 aaPredicted RBP12.47□□□□□ -0.41
CLN3-257ENST00000637110 SIX4Q9UIU6 781 aa12.47□□□□□ -0.41
CLN3-257ENST00000637110 ASB3Q9Y575 518 aa12.47□□□□□ -0.41
CLN3-257ENST00000637110 PCDHB5Q9Y5E4 795 aa12.47□□□□□ -0.41
CLN3-257ENST00000637110 CEP295Q9C0D2 2601 aa12.47□□□□□ -0.41
CLN3-257ENST00000637110 FAM237AA0A1B0GTK4 181 aa12.46□□□□□ -0.41
CLN3-257ENST00000637110 A0A1W2PRU2 124 aa12.46□□□□□ -0.41
CLN3-257ENST00000637110 CALUO43852 315 aaPredicted RBP12.46□□□□□ -0.41
CLN3-257ENST00000637110 CD72P21854 359 aa12.46□□□□□ -0.41
CLN3-257ENST00000637110 CCR2P41597 374 aa12.46□□□□□ -0.41
CLN3-257ENST00000637110 LHX1P48742 406 aa12.46□□□□□ -0.41
CLN3-257ENST00000637110 TEAD2Q15562 447 aa12.46□□□□□ -0.41
CLN3-257ENST00000637110 NFE2Q16621 373 aaPredicted RBP12.46□□□□□ -0.41
CLN3-257ENST00000637110 ARHGAP15Q53QZ3 475 aa12.46□□□□□ -0.41
CLN3-257ENST00000637110 C12orf56Q8IXR9 622 aa12.46□□□□□ -0.41
CLN3-257ENST00000637110 TOP6BLQ8N6T0 577 aa12.46□□□□□ -0.41
CLN3-257ENST00000637110 GCNAQ96QF7 691 aa12.46□□□□□ -0.41
CLN3-257ENST00000637110 LPIN3Q9BQK8 851 aa12.46□□□□□ -0.41
CLN3-257ENST00000637110 ACBD6Q9BR61 282 aa12.46□□□□□ -0.41
CLN3-257ENST00000637110 GDAP2Q9NXN4 497 aa12.46□□□□□ -0.41
CLN3-257ENST00000637110 MAPK8IP1Q9UQF2 711 aa12.46□□□□□ -0.41
CLN3-257ENST00000637110 FRMD4BQ9Y2L6 1034 aa12.46□□□□□ -0.41
CLN3-257ENST00000637110 NOTCH4Q99466 2003 aa12.45□□□□□ -0.42
CLN3-257ENST00000637110 ASPMQ8IZT6 3477 aa12.45□□□□□ -0.42
CLN3-257ENST00000637110 ECI2O75521 394 aa12.45□□□□□ -0.42
CLN3-257ENST00000637110 MICAL2O94851 1124 aa12.45□□□□□ -0.42
CLN3-257ENST00000637110 CST3P01034 146 aaPredicted RBP12.45□□□□□ -0.42
CLN3-257ENST00000637110 NR3C1P04150 777 aa12.45□□□□□ -0.42
CLN3-257ENST00000637110 PDGFRBP09619 1106 aa12.45□□□□□ -0.42
CLN3-257ENST00000637110 HAPLN1P10915 354 aaPredicted RBP12.45□□□□□ -0.42
CLN3-257ENST00000637110 TARSP26639 723 aaKnown RBP12.45□□□□□ -0.42
CLN3-257ENST00000637110 GABRR2P28476 465 aa12.45□□□□□ -0.42
CLN3-257ENST00000637110 PCSK1P29120 753 aa12.45□□□□□ -0.42
CLN3-257ENST00000637110 CASP4P49662 377 aa12.45□□□□□ -0.42
CLN3-257ENST00000637110 TNNC1P63316 161 aa12.45□□□□□ -0.42
CLN3-257ENST00000637110 DPYDQ12882 1025 aa12.45□□□□□ -0.42
CLN3-257ENST00000637110 MTAPQ13126 283 aa12.45□□□□□ -0.42
CLN3-257ENST00000637110 GRM2Q14416 872 aa12.45□□□□□ -0.42
CLN3-257ENST00000637110 INTS6LQ5JSJ4 861 aaKnown RBP12.45□□□□□ -0.42
CLN3-257ENST00000637110 FAM78AQ5JUQ0 283 aa12.45□□□□□ -0.42
CLN3-257ENST00000637110 N4BP2L1Q5TBK1 243 aaPredicted RBP12.45□□□□□ -0.42
CLN3-257ENST00000637110 TANGO2Q6ICL3 276 aa12.45□□□□□ -0.42
CLN3-257ENST00000637110 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.45□□□□□ -0.42
CLN3-257ENST00000637110 SPATA2LQ8IUW3 424 aaPredicted RBP12.45□□□□□ -0.42
CLN3-257ENST00000637110 CXorf38Q8TB03 319 aa12.45□□□□□ -0.42
CLN3-257ENST00000637110 SHKBP1Q8TBC3 707 aa12.45□□□□□ -0.42
CLN3-257ENST00000637110 ZSCAN18Q8TBC5 510 aaPredicted RBP12.45□□□□□ -0.42
CLN3-257ENST00000637110 PSMG2Q969U7 264 aa12.45□□□□□ -0.42
CLN3-257ENST00000637110 GPR88Q9GZN0 384 aa12.45□□□□□ -0.42
CLN3-257ENST00000637110 DNAJC25Q9H1X3 360 aa12.45□□□□□ -0.42
CLN3-257ENST00000637110 SNX25Q9H3E2 840 aa12.45□□□□□ -0.42
CLN3-257ENST00000637110 TMLHEQ9NVH6 421 aa12.45□□□□□ -0.42
CLN3-257ENST00000637110 HSFX1Q9UBD0 423 aa12.45□□□□□ -0.42
CLN3-257ENST00000637110 GTF3C4Q9UKN8 822 aa12.45□□□□□ -0.42
CLN3-257ENST00000637110 MAGED2Q9UNF1 606 aaPredicted RBP12.45□□□□□ -0.42
CLN3-257ENST00000637110 COL4A3Q01955 1670 aa12.45□□□□□ -0.42
CLN3-257ENST00000637110 TSC2P49815 1807 aa12.44□□□□□ -0.42
CLN3-257ENST00000637110 ZFYVE26Q68DK2 2539 aa12.44□□□□□ -0.42
CLN3-257ENST00000637110 PDXKO00764 312 aa12.44□□□□□ -0.42
CLN3-257ENST00000637110 DPYSL4O14531 572 aa12.44□□□□□ -0.42
CLN3-257ENST00000637110 RHOBTB3O94955 611 aa12.44□□□□□ -0.42
CLN3-257ENST00000637110 FGF19O95750 216 aa12.44□□□□□ -0.42
CLN3-257ENST00000637110 HOXB3P14651 431 aaPredicted RBP12.44□□□□□ -0.42
CLN3-257ENST00000637110 VIPR2P41587 438 aa12.44□□□□□ -0.42
CLN3-257ENST00000637110 CCR3P51677 355 aa12.44□□□□□ -0.42
CLN3-257ENST00000637110 EPHA5P54756 1037 aa12.44□□□□□ -0.42
CLN3-257ENST00000637110 MYL6P60660 151 aa12.44□□□□□ -0.42
CLN3-257ENST00000637110 RPL10AP62906 217 aaKnown RBP12.44□□□□□ -0.42
CLN3-257ENST00000637110 SIM2Q14190 667 aaPredicted RBP12.44□□□□□ -0.42
CLN3-257ENST00000637110 SOWAHAQ2M3V2 549 aa12.44□□□□□ -0.42
CLN3-257ENST00000637110 WDR72Q3MJ13 1102 aa12.44□□□□□ -0.42
CLN3-257ENST00000637110 GPR158Q5T848 1215 aa12.44□□□□□ -0.42
CLN3-257ENST00000637110 MAMSTRQ6ZN01 415 aa12.44□□□□□ -0.42
CLN3-257ENST00000637110 DPH6Q7L8W6 267 aa12.44□□□□□ -0.42
CLN3-257ENST00000637110 OSTM1Q86WC4 334 aa12.44□□□□□ -0.42
CLN3-257ENST00000637110 GPIHBP1Q8IV16 184 aa12.44□□□□□ -0.42
CLN3-257ENST00000637110 SCN4BQ8IWT1 228 aa12.44□□□□□ -0.42
CLN3-257ENST00000637110 YAF2Q8IY57 180 aa12.44□□□□□ -0.42
CLN3-257ENST00000637110 OR6B3Q8NGW1 331 aa12.44□□□□□ -0.42
CLN3-257ENST00000637110 SPATA18Q8TC71 538 aa12.44□□□□□ -0.42
CLN3-257ENST00000637110 ZNF516Q92618 1163 aa12.44□□□□□ -0.42
CLN3-257ENST00000637110 SMARCD2Q92925 531 aa12.44□□□□□ -0.42
CLN3-257ENST00000637110 COL26A1Q96A83 441 aa12.44□□□□□ -0.42
CLN3-257ENST00000637110 ELSPBP1Q96BH3 223 aa12.44□□□□□ -0.42
CLN3-257ENST00000637110 ZSWIM3Q96MP5 696 aa12.44□□□□□ -0.42
CLN3-257ENST00000637110 SYT15Q9BQS2 421 aa12.44□□□□□ -0.42
CLN3-257ENST00000637110 PLA2G2FQ9BZM2 168 aa12.44□□□□□ -0.42
CLN3-257ENST00000637110 KCTD10Q9H3F6 313 aa12.44□□□□□ -0.42
CLN3-257ENST00000637110 BRD9Q9H8M2 597 aa12.44□□□□□ -0.42
CLN3-257ENST00000637110 ZNF334Q9HCZ1 680 aaPredicted RBP12.44□□□□□ -0.42
CLN3-257ENST00000637110 NXF1Q9UBU9 619 aaKnown RBP12.44□□□□□ -0.42
CLN3-257ENST00000637110 HOOK1Q9UJC3 728 aaKnown RBP12.44□□□□□ -0.42
CLN3-257ENST00000637110 LRRIQ3A6PVS8 624 aaPredicted RBP12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms