RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 CELF5Q8N6W0 485 aaKnown RBP13.42□□□□□ -0.26
UPF1-203ENST00000594504 C1orf127Q8N9H9 656 aa13.42□□□□□ -0.26
UPF1-203ENST00000594504 GLIS3Q8NEA6 775 aa13.42□□□□□ -0.26
UPF1-203ENST00000594504 RIN3Q8TB24 985 aa13.42□□□□□ -0.26
UPF1-203ENST00000594504 SECISBP2LQ93073 1101 aaKnown RBP13.42□□□□□ -0.26
UPF1-203ENST00000594504 CCDC47Q96A33 483 aaKnown RBP13.42□□□□□ -0.26
UPF1-203ENST00000594504 TIGD1Q96MW7 591 aa13.42□□□□□ -0.26
UPF1-203ENST00000594504 CBWD1Q9BRT8 395 aa13.42□□□□□ -0.26
UPF1-203ENST00000594504 PDE11AQ9HCR9 933 aa13.42□□□□□ -0.26
UPF1-203ENST00000594504 OBP2AQ9NY56 170 aa13.42□□□□□ -0.26
UPF1-203ENST00000594504 GMEB2Q9UKD1 530 aa13.42□□□□□ -0.26
UPF1-203ENST00000594504 L1RE1Q9UN81 338 aa13.42□□□□□ -0.26
UPF1-203ENST00000594504 PCDHB5Q9Y5E4 795 aa13.42□□□□□ -0.26
UPF1-203ENST00000594504 RIF1Q5UIP0 2472 aaKnown RBP13.42□□□□□ -0.26
UPF1-203ENST00000594504 ZNF638Q14966 1978 aaKnown RBP13.41□□□□□ -0.26
UPF1-203ENST00000594504 DCDC2BA2VCK2 349 aa13.41□□□□□ -0.26
UPF1-203ENST00000594504 OTOL1A6NHN0 477 aaPredicted RBP13.41□□□□□ -0.26
UPF1-203ENST00000594504 GADD45BO75293 160 aaPredicted RBP13.41□□□□□ -0.26
UPF1-203ENST00000594504 RPN1P04843 607 aaKnown RBP13.41□□□□□ -0.26
UPF1-203ENST00000594504 KRT19P08727 400 aa13.41□□□□□ -0.26
UPF1-203ENST00000594504 PRR29P0C7W0 189 aa13.41□□□□□ -0.26
UPF1-203ENST00000594504 CYP2F1P24903 491 aa13.41□□□□□ -0.26
UPF1-203ENST00000594504 NLRP12P59046 1061 aa13.41□□□□□ -0.26
UPF1-203ENST00000594504 UBE2HP62256 183 aa13.41□□□□□ -0.26
UPF1-203ENST00000594504 POU5F1Q01860 360 aaKnown RBP13.41□□□□□ -0.26
UPF1-203ENST00000594504 DPYDQ12882 1025 aa13.41□□□□□ -0.26
UPF1-203ENST00000594504 BFSP1Q12934 665 aa13.41□□□□□ -0.26
UPF1-203ENST00000594504 SIM2Q14190 667 aaPredicted RBP13.41□□□□□ -0.26
UPF1-203ENST00000594504 LRRC32Q14392 662 aa13.41□□□□□ -0.26
UPF1-203ENST00000594504 PPP2R5DQ14738 602 aa13.41□□□□□ -0.26
UPF1-203ENST00000594504 KMT5BQ4FZB7 885 aa13.41□□□□□ -0.26
UPF1-203ENST00000594504 DGKKQ5KSL6 1271 aa13.41□□□□□ -0.26
UPF1-203ENST00000594504 BRSK2Q8IWQ3 736 aa13.41□□□□□ -0.26
UPF1-203ENST00000594504 CXorf38Q8TB03 319 aa13.41□□□□□ -0.26
UPF1-203ENST00000594504 ZNF507Q8TCN5 953 aa13.41□□□□□ -0.26
UPF1-203ENST00000594504 C2orf15Q8WU43 125 aaKnown RBP13.41□□□□□ -0.26
UPF1-203ENST00000594504 USP13Q92995 863 aaPredicted RBP13.41□□□□□ -0.26
UPF1-203ENST00000594504 GCNAQ96QF7 691 aa13.41□□□□□ -0.26
UPF1-203ENST00000594504 IER2Q9BTL4 223 aa13.41□□□□□ -0.26
UPF1-203ENST00000594504 EBF3Q9H4W6 596 aa13.41□□□□□ -0.26
UPF1-203ENST00000594504 SLC39A2Q9NP94 309 aa13.41□□□□□ -0.26
UPF1-203ENST00000594504 HPS4Q9NQG7 708 aa13.41□□□□□ -0.26
UPF1-203ENST00000594504 POLR3BQ9NW08 1133 aaPredicted RBP13.41□□□□□ -0.26
UPF1-203ENST00000594504 DDX43Q9NXZ2 648 aaKnown RBP13.41□□□□□ -0.26
UPF1-203ENST00000594504 HOOK1Q9UJC3 728 aaKnown RBP13.41□□□□□ -0.26
UPF1-203ENST00000594504 GTF3C4Q9UKN8 822 aa13.41□□□□□ -0.26
UPF1-203ENST00000594504 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.41□□□□□ -0.26
UPF1-203ENST00000594504 OBSL1O75147 1896 aa13.41□□□□□ -0.26
UPF1-203ENST00000594504 ATG2BQ96BY7 2078 aa13.4□□□□□ -0.26
UPF1-203ENST00000594504 DCHS1Q96JQ0 3298 aa13.4□□□□□ -0.26
UPF1-203ENST00000594504 EXTL3O43909 919 aa13.4□□□□□ -0.26
UPF1-203ENST00000594504 RHOBTB3O94955 611 aa13.4□□□□□ -0.26
UPF1-203ENST00000594504 LDHAP00338 332 aaKnown RBP13.4□□□□□ -0.26
UPF1-203ENST00000594504 GARTP22102 1010 aa13.4□□□□□ -0.26
UPF1-203ENST00000594504 WEE1P30291 646 aa13.4□□□□□ -0.26
UPF1-203ENST00000594504 PXNP49023 591 aaPredicted RBP13.4□□□□□ -0.26
UPF1-203ENST00000594504 SMARCB1Q12824 385 aa13.4□□□□□ -0.26
UPF1-203ENST00000594504 CCINQ13939 588 aa13.4□□□□□ -0.26
UPF1-203ENST00000594504 BMT2Q1RMZ1 405 aa13.4□□□□□ -0.26
UPF1-203ENST00000594504 ITPRIPL2Q3MIP1 535 aa13.4□□□□□ -0.26
UPF1-203ENST00000594504 NT5DC4Q86YG4 428 aa13.4□□□□□ -0.26
UPF1-203ENST00000594504 GPR161Q8N6U8 529 aaKnown RBP13.4□□□□□ -0.26
UPF1-203ENST00000594504 CACTINQ8WUQ7 758 aaKnown RBP13.4□□□□□ -0.26
UPF1-203ENST00000594504 SCFD1Q8WVM8 642 aa13.4□□□□□ -0.26
UPF1-203ENST00000594504 CHFRQ96EP1 664 aa13.4□□□□□ -0.26
UPF1-203ENST00000594504 MSANTD3Q96H12 275 aa13.4□□□□□ -0.26
UPF1-203ENST00000594504 ZNF560Q96MR9 790 aa13.4□□□□□ -0.26
UPF1-203ENST00000594504 CYP2S1Q96SQ9 504 aa13.4□□□□□ -0.26
UPF1-203ENST00000594504 FAM83CQ9BQN1 747 aa13.4□□□□□ -0.26
UPF1-203ENST00000594504 FBRSL1Q9HCM7 1045 aaKnown RBP13.4□□□□□ -0.26
UPF1-203ENST00000594504 THG1LQ9NWX6 298 aaKnown RBP13.4□□□□□ -0.26
UPF1-203ENST00000594504 RBAKQ9NYW8 714 aaPredicted RBP13.4□□□□□ -0.26
UPF1-203ENST00000594504 SIX4Q9UIU6 781 aa13.4□□□□□ -0.26
UPF1-203ENST00000594504 RAB23Q9ULC3 237 aa13.4□□□□□ -0.26
UPF1-203ENST00000594504 SNX9Q9Y5X1 595 aa13.4□□□□□ -0.26
UPF1-203ENST00000594504 KIAA0391O15091 583 aaKnown RBP13.39□□□□□ -0.27
UPF1-203ENST00000594504 HUS1O60921 280 aa13.39□□□□□ -0.27
UPF1-203ENST00000594504 ATP2C2O75185 946 aa13.39□□□□□ -0.27
UPF1-203ENST00000594504 ARSAP15289 507 aa13.39□□□□□ -0.27
UPF1-203ENST00000594504 HOXD13P35453 343 aa13.39□□□□□ -0.27
UPF1-203ENST00000594504 AVPR1AP37288 418 aa13.39□□□□□ -0.27
UPF1-203ENST00000594504 PNPLA4P41247 253 aa13.39□□□□□ -0.27
UPF1-203ENST00000594504 SNRPFP62306 86 aaKnown RBP13.39□□□□□ -0.27
UPF1-203ENST00000594504 TSPY1Q01534 308 aa13.39□□□□□ -0.27
UPF1-203ENST00000594504 STK4Q13043 487 aa13.39□□□□□ -0.27
UPF1-203ENST00000594504 RUNX3Q13761 415 aa13.39□□□□□ -0.27
UPF1-203ENST00000594504 KCNB1Q14721 858 aa13.39□□□□□ -0.27
UPF1-203ENST00000594504 INTS6LQ5JSJ4 861 aaKnown RBP13.39□□□□□ -0.27
UPF1-203ENST00000594504 NAIF1Q69YI7 327 aaPredicted RBP13.39□□□□□ -0.27
UPF1-203ENST00000594504 LAIR1Q6GTX8 287 aa13.39□□□□□ -0.27
UPF1-203ENST00000594504 FSTL4Q6MZW2 842 aa13.39□□□□□ -0.27
UPF1-203ENST00000594504 C1orf228Q6PIY5 440 aa13.39□□□□□ -0.27
UPF1-203ENST00000594504 LONP2Q86WA8 852 aa13.39□□□□□ -0.27
UPF1-203ENST00000594504 ELOA2Q8IYF1 753 aaPredicted RBP13.39□□□□□ -0.27
UPF1-203ENST00000594504 KIAA0895Q8NCT3 520 aa13.39□□□□□ -0.27
UPF1-203ENST00000594504 TTC16Q8NEE8 873 aa13.39□□□□□ -0.27
UPF1-203ENST00000594504 SLC22A12Q96S37 553 aa13.39□□□□□ -0.27
UPF1-203ENST00000594504 PKMYT1Q99640 499 aa13.39□□□□□ -0.27
UPF1-203ENST00000594504 ACBD6Q9BR61 282 aa13.39□□□□□ -0.27
UPF1-203ENST00000594504 MTMR12Q9C0I1 747 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms