RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 EZH1Q92800 747 aaPredicted RBP12.62□□□□□ -0.39
CLIP3-204ENST00000590559 SAAL1Q96ER3 474 aa12.62□□□□□ -0.39
CLIP3-204ENST00000590559 LOXL4Q96JB6 756 aa12.62□□□□□ -0.39
CLIP3-204ENST00000590559 SLC22A12Q96S37 553 aa12.62□□□□□ -0.39
CLIP3-204ENST00000590559 CBWD1Q9BRT8 395 aa12.62□□□□□ -0.39
CLIP3-204ENST00000590559 DDX43Q9NXZ2 648 aaKnown RBP12.62□□□□□ -0.39
CLIP3-204ENST00000590559 TBC1D7Q9P0N9 293 aa12.62□□□□□ -0.39
CLIP3-204ENST00000590559 CCDC39Q9UFE4 941 aa12.62□□□□□ -0.39
CLIP3-204ENST00000590559 ITGA11Q9UKX5 1188 aa12.62□□□□□ -0.39
CLIP3-204ENST00000590559 EXOC7Q9UPT5 735 aa12.62□□□□□ -0.39
CLIP3-204ENST00000590559 PCDHB13Q9Y5F0 798 aa12.62□□□□□ -0.39
CLIP3-204ENST00000590559 SDK1Q7Z5N4 2213 aa12.62□□□□□ -0.39
CLIP3-204ENST00000590559 MAP1BP46821 2468 aaKnown RBP12.62□□□□□ -0.39
CLIP3-204ENST00000590559 PTPRJQ12913 1337 aa12.62□□□□□ -0.39
CLIP3-204ENST00000590559 NUP205Q92621 2012 aa12.61□□□□□ -0.39
CLIP3-204ENST00000590559 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.61□□□□□ -0.39
CLIP3-204ENST00000590559 HCRTO43612 131 aa12.61□□□□□ -0.39
CLIP3-204ENST00000590559 FOXD2O60548 495 aaPredicted RBP12.61□□□□□ -0.39
CLIP3-204ENST00000590559 HUS1O60921 280 aa12.61□□□□□ -0.39
CLIP3-204ENST00000590559 AKAP3O75969 853 aa12.61□□□□□ -0.39
CLIP3-204ENST00000590559 GCNT3O95395 438 aa12.61□□□□□ -0.39
CLIP3-204ENST00000590559 EGFP01133 1207 aa12.61□□□□□ -0.39
CLIP3-204ENST00000590559 ARSAP15289 507 aa12.61□□□□□ -0.39
CLIP3-204ENST00000590559 TCF3P15923 654 aa12.61□□□□□ -0.39
CLIP3-204ENST00000590559 GJA4P35212 333 aa12.61□□□□□ -0.39
CLIP3-204ENST00000590559 GALK1P51570 392 aa12.61□□□□□ -0.39
CLIP3-204ENST00000590559 LIMK1P53667 647 aa12.61□□□□□ -0.39
CLIP3-204ENST00000590559 TFAMQ00059 246 aaKnown RBP12.61□□□□□ -0.39
CLIP3-204ENST00000590559 USP4Q13107 963 aa12.61□□□□□ -0.39
CLIP3-204ENST00000590559 ALCAMQ13740 583 aa12.61□□□□□ -0.39
CLIP3-204ENST00000590559 DDR2Q16832 855 aa12.61□□□□□ -0.39
CLIP3-204ENST00000590559 SOWAHAQ2M3V2 549 aa12.61□□□□□ -0.39
CLIP3-204ENST00000590559 SDHAF4Q5VUM1 108 aa12.61□□□□□ -0.39
CLIP3-204ENST00000590559 RRAGBQ5VZM2 374 aa12.61□□□□□ -0.39
CLIP3-204ENST00000590559 FAM173BQ6P4H8 233 aa12.61□□□□□ -0.39
CLIP3-204ENST00000590559 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.61□□□□□ -0.39
CLIP3-204ENST00000590559 TOP6BLQ8N6T0 577 aa12.61□□□□□ -0.39
CLIP3-204ENST00000590559 CACTINQ8WUQ7 758 aaKnown RBP12.61□□□□□ -0.39
CLIP3-204ENST00000590559 KBTBD7Q8WVZ9 684 aa12.61□□□□□ -0.39
CLIP3-204ENST00000590559 MRPS31Q92665 395 aaKnown RBP12.61□□□□□ -0.39
CLIP3-204ENST00000590559 FUBP3Q96I24 572 aaKnown RBP eCLIP12.61□□□□□ -0.39
CLIP3-204ENST00000590559 ZC3H10Q96K80 434 aaKnown RBP12.61□□□□□ -0.39
CLIP3-204ENST00000590559 TMEM206Q9H813 350 aa12.61□□□□□ -0.39
CLIP3-204ENST00000590559 PDE11AQ9HCR9 933 aa12.61□□□□□ -0.39
CLIP3-204ENST00000590559 RBAKQ9NYW8 714 aaPredicted RBP12.61□□□□□ -0.39
CLIP3-204ENST00000590559 GCNT4Q9P109 453 aa12.61□□□□□ -0.39
CLIP3-204ENST00000590559 UXTQ9UBK9 157 aaPredicted RBP12.61□□□□□ -0.39
CLIP3-204ENST00000590559 GTF3C4Q9UKN8 822 aa12.61□□□□□ -0.39
CLIP3-204ENST00000590559 CNOT1A5YKK6 2376 aaKnown RBP12.61□□□□□ -0.39
CLIP3-204ENST00000590559 VPS37CA5D8V6 355 aaPredicted RBP12.6□□□□□ -0.39
CLIP3-204ENST00000590559 GOLGA8IPA6NC78 632 aa12.6□□□□□ -0.39
CLIP3-204ENST00000590559 GOLGA8JA6NMD2 632 aa12.6□□□□□ -0.39
CLIP3-204ENST00000590559 ATG13O75143 517 aa12.6□□□□□ -0.39
CLIP3-204ENST00000590559 EPN2O95208 641 aa12.6□□□□□ -0.39
CLIP3-204ENST00000590559 ZNF806P0C7X5 589 aa12.6□□□□□ -0.39
CLIP3-204ENST00000590559 SYT1P21579 422 aa12.6□□□□□ -0.39
CLIP3-204ENST00000590559 DRD1P21728 446 aa12.6□□□□□ -0.39
CLIP3-204ENST00000590559 ACAT1P24752 427 aaKnown RBP12.6□□□□□ -0.39
CLIP3-204ENST00000590559 HOXD13P35453 343 aa12.6□□□□□ -0.39
CLIP3-204ENST00000590559 MAGEA11P43364 429 aa12.6□□□□□ -0.39
CLIP3-204ENST00000590559 LHX1P48742 406 aa12.6□□□□□ -0.39
CLIP3-204ENST00000590559 RPL10AP62906 217 aaKnown RBP12.6□□□□□ -0.39
CLIP3-204ENST00000590559 MYL7Q01449 175 aa12.6□□□□□ -0.39
CLIP3-204ENST00000590559 FAM160A1Q05DH4 1040 aa12.6□□□□□ -0.39
CLIP3-204ENST00000590559 GRSF1Q12849 480 aaKnown RBP eCLIP12.6□□□□□ -0.39
CLIP3-204ENST00000590559 BFSP1Q12934 665 aa12.6□□□□□ -0.39
CLIP3-204ENST00000590559 SLC39A14Q15043 492 aa12.6□□□□□ -0.39
CLIP3-204ENST00000590559 PDGFRLQ15198 375 aa12.6□□□□□ -0.39
CLIP3-204ENST00000590559 EML3Q32P44 896 aa12.6□□□□□ -0.39
CLIP3-204ENST00000590559 PLA2G2CQ5R387 149 aa12.6□□□□□ -0.39
CLIP3-204ENST00000590559 NAIF1Q69YI7 327 aaPredicted RBP12.6□□□□□ -0.39
CLIP3-204ENST00000590559 DPH6Q7L8W6 267 aa12.6□□□□□ -0.39
CLIP3-204ENST00000590559 CAMKK1Q8N5S9 505 aa12.6□□□□□ -0.39
CLIP3-204ENST00000590559 CSGALNACT2Q8N6G5 542 aa12.6□□□□□ -0.39
CLIP3-204ENST00000590559 OSCP1Q8WVF1 389 aa12.6□□□□□ -0.39
CLIP3-204ENST00000590559 CYP2S1Q96SQ9 504 aa12.6□□□□□ -0.39
CLIP3-204ENST00000590559 ECT2Q9H8V3 914 aa12.6□□□□□ -0.39
CLIP3-204ENST00000590559 INTS13Q9NVM9 706 aa12.6□□□□□ -0.39
CLIP3-204ENST00000590559 POLR3BQ9NW08 1133 aaPredicted RBP12.6□□□□□ -0.39
CLIP3-204ENST00000590559 MAGED2Q9UNF1 606 aaPredicted RBP12.6□□□□□ -0.39
CLIP3-204ENST00000590559 SNX9Q9Y5X1 595 aa12.6□□□□□ -0.39
CLIP3-204ENST00000590559 SPEGQ15772 3267 aa12.6□□□□□ -0.39
CLIP3-204ENST00000590559 RNF40O75150 1001 aa12.59□□□□□ -0.39
CLIP3-204ENST00000590559 RPP40O75818 363 aaKnown RBP12.59□□□□□ -0.39
CLIP3-204ENST00000590559 PRPF6O94906 941 aaKnown RBP12.59□□□□□ -0.39
CLIP3-204ENST00000590559 PDCP20941 246 aa12.59□□□□□ -0.39
CLIP3-204ENST00000590559 LMO2P25791 158 aa12.59□□□□□ -0.39
CLIP3-204ENST00000590559 PXNP49023 591 aaPredicted RBP12.59□□□□□ -0.39
CLIP3-204ENST00000590559 RBP5P82980 135 aa12.59□□□□□ -0.39
CLIP3-204ENST00000590559 ZXDBP98169 803 aa12.59□□□□□ -0.39
CLIP3-204ENST00000590559 MTF1Q14872 753 aa12.59□□□□□ -0.39
CLIP3-204ENST00000590559 FBXO43Q4G163 708 aa12.59□□□□□ -0.39
CLIP3-204ENST00000590559 PPM1JQ5JR12 505 aa12.59□□□□□ -0.39
CLIP3-204ENST00000590559 CCDC73Q6ZRK6 1079 aa12.59□□□□□ -0.39
CLIP3-204ENST00000590559 CEP68Q76N32 757 aa12.59□□□□□ -0.39
CLIP3-204ENST00000590559 CACNA2D4Q7Z3S7 1137 aa12.59□□□□□ -0.39
CLIP3-204ENST00000590559 KBTBD6Q86V97 674 aa12.59□□□□□ -0.39
CLIP3-204ENST00000590559 ADGRF2Q8IZF7 708 aa12.59□□□□□ -0.39
CLIP3-204ENST00000590559 GPD1LQ8N335 351 aa12.59□□□□□ -0.39
CLIP3-204ENST00000590559 GLIS3Q8NEA6 775 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms