RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760	RMND1	Q9NWS8	449 aa		14.25	□□□□□ -0.13
SREBF1-223	ENST00000584760	GTF3C4	Q9UKN8	822 aa		14.25	□□□□□ -0.13
SREBF1-223	ENST00000584760	FBXO4	Q9UKT5	387 aa		14.25	□□□□□ -0.13
SREBF1-223	ENST00000584760	HELZ	P42694	1942 aa	Known RBP	14.25	□□□□□ -0.13
SREBF1-223	ENST00000584760	DMXL1	Q9Y485	3027 aa		14.25	□□□□□ -0.13
SREBF1-223	ENST00000584760	NCAN	O14594	1321 aa		14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760		A0A1W2PRU2	124 aa		14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	MYBPHL	A2RUH7	354 aa		14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	TACC1	O75410	805 aa		14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	VNN1	O95497	513 aa		14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	LMO2	P25791	158 aa		14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	ATIC	P31939	592 aa		14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	PSMC1	P62191	440 aa	Known RBP	14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	BIRC3	Q13489	604 aa		14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	TRPC3	Q13507	836 aa		14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	VEPH1	Q14D04	833 aa		14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	MLF2	Q15773	248 aa	Predicted RBP	14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	EDRF1	Q3B7T1	1238 aa		14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	ZNF528	Q3MIS6	628 aa		14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	ZACN	Q401N2	412 aa		14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	CFAP221	Q4G0U5	840 aa		14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	COBLL1	Q53SF7	1204 aa		14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	ZNF658	Q5TYW1	1059 aa	Predicted RBP	14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	TANGO2	Q6ICL3	276 aa		14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	FAM171B	Q6P995	826 aa		14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	ELOA2	Q8IYF1	753 aa	Predicted RBP	14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	ERCC4	Q92889	916 aa	Predicted RBP	14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	SYAP1	Q96A49	352 aa	Predicted RBP	14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	ELSPBP1	Q96BH3	223 aa		14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	MMS19	Q96T76	1030 aa		14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	SYT15	Q9BQS2	421 aa		14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	MRPL45	Q9BRJ2	306 aa	Known RBP	14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	MKNK1	Q9BUB5	465 aa		14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	DDX23	Q9BUQ8	820 aa	Known RBP	14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	PLA2G2F	Q9BZM2	168 aa		14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	IL21	Q9HBE4	155 aa		14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	CRTAC1	Q9NQ79	661 aa		14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	FRMD4B	Q9Y2L6	1034 aa		14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	PCDHA5	Q9Y5H7	936 aa		14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	PATJ	Q8NI35	1801 aa		14.24	□□□□□ -0.13
SREBF1-223	ENST00000584760	NCOR2	Q9Y618	2525 aa		14.23	□□□□□ -0.13
SREBF1-223	ENST00000584760	IKBKB	O14920	756 aa		14.23	□□□□□ -0.13
SREBF1-223	ENST00000584760	ATP2C2	O75185	946 aa		14.23	□□□□□ -0.13
SREBF1-223	ENST00000584760	GADD45B	O75293	160 aa	Predicted RBP	14.23	□□□□□ -0.13
SREBF1-223	ENST00000584760	FGF19	O95750	216 aa		14.23	□□□□□ -0.13
SREBF1-223	ENST00000584760	GABRR2	P28476	465 aa		14.23	□□□□□ -0.13
SREBF1-223	ENST00000584760	PRCP	P42785	496 aa		14.23	□□□□□ -0.13
SREBF1-223	ENST00000584760	GPR15	P49685	360 aa		14.23	□□□□□ -0.13
SREBF1-223	ENST00000584760	ATXN1	P54253	815 aa	Known RBP	14.23	□□□□□ -0.13
SREBF1-223	ENST00000584760	TNNC1	P63316	161 aa		14.23	□□□□□ -0.13
SREBF1-223	ENST00000584760	PRKCQ	Q04759	706 aa		14.23	□□□□□ -0.13
SREBF1-223	ENST00000584760	ENPEP	Q07075	957 aa		14.23	□□□□□ -0.13
SREBF1-223	ENST00000584760	NCOA4	Q13772	614 aa		14.23	□□□□□ -0.13
SREBF1-223	ENST00000584760	ZNF699	Q32M78	642 aa		14.23	□□□□□ -0.13
SREBF1-223	ENST00000584760	WDR72	Q3MJ13	1102 aa		14.23	□□□□□ -0.13
SREBF1-223	ENST00000584760	STXBP5	Q5T5C0	1151 aa		14.23	□□□□□ -0.13
SREBF1-223	ENST00000584760	INTS8	Q75QN2	995 aa	Known RBP	14.23	□□□□□ -0.13
SREBF1-223	ENST00000584760	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	14.23	□□□□□ -0.13
SREBF1-223	ENST00000584760	FAM200A	Q8TCP9	573 aa		14.23	□□□□□ -0.13
SREBF1-223	ENST00000584760	GIPC2	Q8TF65	315 aa		14.23	□□□□□ -0.13
SREBF1-223	ENST00000584760	SMARCD2	Q92925	531 aa		14.23	□□□□□ -0.13
SREBF1-223	ENST00000584760	SMARCE1	Q969G3	411 aa		14.23	□□□□□ -0.13
SREBF1-223	ENST00000584760	MYLPF	Q96A32	169 aa		14.23	□□□□□ -0.13
SREBF1-223	ENST00000584760	FUBP3	Q96I24	572 aa	Known RBP eCLIP	14.23	□□□□□ -0.13
SREBF1-223	ENST00000584760	PI4K2A	Q9BTU6	479 aa		14.23	□□□□□ -0.13
SREBF1-223	ENST00000584760	TRPV4	Q9HBA0	871 aa		14.23	□□□□□ -0.13
SREBF1-223	ENST00000584760	CDH9	Q9ULB4	789 aa		14.23	□□□□□ -0.13
SREBF1-223	ENST00000584760	PCDHGA2	Q9Y5H1	932 aa		14.23	□□□□□ -0.13
SREBF1-223	ENST00000584760	OTOGL	Q3ZCN5	2332 aa		14.23	□□□□□ -0.13
SREBF1-223	ENST00000584760	MYH10	P35580	1976 aa		14.22	□□□□□ -0.13
SREBF1-223	ENST00000584760	PHACTR2	O75167	634 aa		14.22	□□□□□ -0.13
SREBF1-223	ENST00000584760	SMC2	O95347	1197 aa		14.22	□□□□□ -0.13
SREBF1-223	ENST00000584760	FAM163B	P0C2L3	166 aa		14.22	□□□□□ -0.13
SREBF1-223	ENST00000584760	TRIM49	P0CI25	452 aa		14.22	□□□□□ -0.13
SREBF1-223	ENST00000584760	TRIM49C	P0CI26	452 aa		14.22	□□□□□ -0.13
SREBF1-223	ENST00000584760	HMGA1	P17096	107 aa	Known RBP	14.22	□□□□□ -0.13
SREBF1-223	ENST00000584760	SDHB	P21912	280 aa		14.22	□□□□□ -0.13
SREBF1-223	ENST00000584760	CYP2F1	P24903	491 aa		14.22	□□□□□ -0.13
SREBF1-223	ENST00000584760	RPL13	P26373	211 aa	Known RBP	14.22	□□□□□ -0.13
SREBF1-223	ENST00000584760	VAMP7	P51809	220 aa		14.22	□□□□□ -0.13
SREBF1-223	ENST00000584760	TSSK4	Q6SA08	328 aa		14.22	□□□□□ -0.13
SREBF1-223	ENST00000584760	SV2A	Q7L0J3	742 aa		14.22	□□□□□ -0.13
SREBF1-223	ENST00000584760	SPATA2L	Q8IUW3	424 aa	Predicted RBP	14.22	□□□□□ -0.13
SREBF1-223	ENST00000584760	FAM186B	Q8IYM0	893 aa		14.22	□□□□□ -0.13
SREBF1-223	ENST00000584760	GPR161	Q8N6U8	529 aa	Known RBP	14.22	□□□□□ -0.13
SREBF1-223	ENST00000584760	STKLD1	Q8NE28	680 aa		14.22	□□□□□ -0.13
SREBF1-223	ENST00000584760	SECISBP2L	Q93073	1101 aa	Known RBP	14.22	□□□□□ -0.13
SREBF1-223	ENST00000584760	OSBPL6	Q9BZF3	934 aa		14.22	□□□□□ -0.13
SREBF1-223	ENST00000584760	GPR88	Q9GZN0	384 aa		14.22	□□□□□ -0.13
SREBF1-223	ENST00000584760	SMYD3	Q9H7B4	428 aa		14.22	□□□□□ -0.13
SREBF1-223	ENST00000584760	ZFP14	Q9HCL3	533 aa		14.22	□□□□□ -0.13
SREBF1-223	ENST00000584760	LTB4R2	Q9NPC1	389 aa		14.22	□□□□□ -0.13
SREBF1-223	ENST00000584760	NXF1	Q9UBU9	619 aa	Known RBP	14.22	□□□□□ -0.13
SREBF1-223	ENST00000584760	HOOK1	Q9UJC3	728 aa	Known RBP	14.22	□□□□□ -0.13
SREBF1-223	ENST00000584760	NOL4	O94818	638 aa		14.21	□□□□□ -0.13
SREBF1-223	ENST00000584760	ASS1	P00966	412 aa	Known RBP	14.21	□□□□□ -0.13
SREBF1-223	ENST00000584760	PDGFRB	P09619	1106 aa		14.21	□□□□□ -0.13
SREBF1-223	ENST00000584760	PSMC2	P35998	433 aa	Known RBP	14.21	□□□□□ -0.13
SREBF1-223	ENST00000584760	MAGEA11	P43364	429 aa		14.21	□□□□□ -0.13
SREBF1-223	ENST00000584760	MCCD1	P59942	119 aa	Predicted RBP	14.21	□□□□□ -0.13

Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms