RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 GPS1Q13098 491 aa10.61□□□□□ -0.71
VPS53-220ENST00000576149 LAMC2Q13753 1193 aa10.61□□□□□ -0.71
VPS53-220ENST00000576149 ITIH4Q14624 930 aa10.61□□□□□ -0.71
VPS53-220ENST00000576149 MORF4L2Q15014 288 aa10.61□□□□□ -0.71
VPS53-220ENST00000576149 TAZQ16635 292 aa10.61□□□□□ -0.71
VPS53-220ENST00000576149 ANKRD20A8PQ5CZ79 823 aa10.61□□□□□ -0.71
VPS53-220ENST00000576149 ARMCX2Q7L311 632 aa10.61□□□□□ -0.71
VPS53-220ENST00000576149 XYLT1Q86Y38 959 aa10.61□□□□□ -0.71
VPS53-220ENST00000576149 CCDC13Q8IYE1 715 aa10.61□□□□□ -0.71
VPS53-220ENST00000576149 TMEM130Q8N3G9 435 aa10.61□□□□□ -0.71
VPS53-220ENST00000576149 CFAP57Q96MR6 1250 aa10.61□□□□□ -0.71
VPS53-220ENST00000576149 ELOVL4Q9GZR5 314 aa10.61□□□□□ -0.71
VPS53-220ENST00000576149 ASB7Q9H672 318 aa10.61□□□□□ -0.71
VPS53-220ENST00000576149 SMYD3Q9H7B4 428 aa10.61□□□□□ -0.71
VPS53-220ENST00000576149 CYP3A43Q9HB55 503 aa10.61□□□□□ -0.71
VPS53-220ENST00000576149 A0A087WZ62 844 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 FOXO6A8MYZ6 492 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 DNM1LO00429 736 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 NDC80O14777 642 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 MAGEB2O15479 319 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 CSDE1O75534 798 aaKnown RBP10.6□□□□□ -0.71
VPS53-220ENST00000576149 LGALS2P05162 132 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 VIMP08670 466 aaKnown RBP10.6□□□□□ -0.71
VPS53-220ENST00000576149 BRAFP15056 766 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 PECAM1P16284 738 aaPredicted RBP10.6□□□□□ -0.71
VPS53-220ENST00000576149 IL1R2P27930 398 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 ORC1Q13415 861 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 ZNF268Q14587 947 aaPredicted RBP10.6□□□□□ -0.71
VPS53-220ENST00000576149 HADHQ16836 314 aaKnown RBP10.6□□□□□ -0.71
VPS53-220ENST00000576149 RNASEH2BQ5TBB1 312 aaKnown RBP10.6□□□□□ -0.71
VPS53-220ENST00000576149 FBXW10Q5XX13 1052 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 ANKS4BQ8N8V4 417 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 CCT6BQ92526 530 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 HAUS1Q96CS2 278 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 TMEM176AQ96HP8 235 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 FDXACB1Q9BRP7 624 aaPredicted RBP10.6□□□□□ -0.71
VPS53-220ENST00000576149 TMEM121Q9BTD3 319 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 KDM4CQ9H3R0 1056 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 PDZD7Q9H5P4 517 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 ZWILCHQ9H900 591 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 EFCC1Q9HA90 598 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 PCDH9Q9HC56 1237 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 SAYSD1Q9NPB0 183 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 HMGXB4Q9UGU5 601 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 ACTL7BQ9Y614 415 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 SRCAPQ6ZRS2 3230 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 MGAMO43451 1857 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 H0YHG0 523 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 MICAL2O94851 1124 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 ERBB2P04626 1255 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 KDELR1P24390 212 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 GABRB2P47870 512 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 PLCB3Q01970 1234 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 MPP2Q14168 576 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 LRRC14Q15048 493 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 SPRED3Q2MJR0 410 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 SMTNL2Q2TAL5 461 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 SLC10A6Q3KNW5 377 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 KCNT1Q5JUK3 1230 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 GJC2Q5T442 439 aaPredicted RBP10.6□□□□□ -0.71
VPS53-220ENST00000576149 CYP4F22Q6NT55 531 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 TAPT1Q6NXT6 567 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 RIBC1Q8N443 379 aaPredicted RBP10.6□□□□□ -0.71
VPS53-220ENST00000576149 MGARPQ8TDB4 240 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 DYDC1Q8WWB3 177 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 TTC25Q96NG3 672 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 FRMD8P1Q9BZ68 369 aaPredicted RBP10.6□□□□□ -0.71
VPS53-220ENST00000576149 NSRP1Q9H0G5 558 aaKnown RBP10.6□□□□□ -0.71
VPS53-220ENST00000576149 KCNK9Q9NPC2 374 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 METTL5Q9NRN9 209 aaKnown RBP10.6□□□□□ -0.71
VPS53-220ENST00000576149 RNF181Q9P0P0 153 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 SAMD15Q9P1V8 674 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 TBK1Q9UHD2 729 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.6□□□□□ -0.71
VPS53-220ENST00000576149 MCM3APO60318 1980 aa10.6□□□□□ -0.71
VPS53-220ENST00000576149 CCT8L1PA6NM43 557 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 SGK1O00141 431 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 GHRP10912 638 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 MAMDC4Q6UXC1 1216 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 BBS12Q6ZW61 710 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 EMC1Q8N766 993 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 TTC13Q8NBP0 860 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 ACTL9Q8TC94 416 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 CKAP2Q8WWK9 683 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 MAML1Q92585 1016 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 MCRS1Q96EZ8 462 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 CPB2Q96IY4 423 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 ELAC2Q9BQ52 826 aaKnown RBP10.59□□□□□ -0.71
VPS53-220ENST00000576149 SYNCQ9H7C4 482 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 SHOC2Q9UQ13 582 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 ALOX15BO15296 676 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 CST8O60676 142 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 PEX14O75381 377 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 GH1P01241 217 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 IFNB1P01574 187 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 HMGCRP04035 888 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 VDRP11473 427 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 P4HA1P13674 534 aa10.59□□□□□ -0.71
VPS53-220ENST00000576149 ARF4P18085 180 aaPredicted RBP10.59□□□□□ -0.71
VPS53-220ENST00000576149 GCAP28676 217 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms