RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 CC2D1AQ6P1N0 951 aaPredicted RBP22.63■■□□□ 1.21
VPS53-216ENST00000574029 FAM173BQ6P4H8 233 aa22.63■■□□□ 1.21
VPS53-216ENST00000574029 CCDC73Q6ZRK6 1079 aa22.63■■□□□ 1.21
VPS53-216ENST00000574029 SYCP3Q8IZU3 236 aa22.63■■□□□ 1.21
VPS53-216ENST00000574029 TOP6BLQ8N6T0 577 aa22.63■■□□□ 1.21
VPS53-216ENST00000574029 GAB3Q8WWW8 586 aa22.63■■□□□ 1.21
VPS53-216ENST00000574029 FAM84AQ96KN4 292 aa22.63■■□□□ 1.21
VPS53-216ENST00000574029 CNTNAP3BQ96NU0 1288 aa22.63■■□□□ 1.21
VPS53-216ENST00000574029 CNTNAP3Q9BZ76 1288 aa22.63■■□□□ 1.21
VPS53-216ENST00000574029 SIX4Q9UIU6 781 aa22.63■■□□□ 1.21
VPS53-216ENST00000574029 GTF3C4Q9UKN8 822 aa22.63■■□□□ 1.21
VPS53-216ENST00000574029 MORC2Q9Y6X9 1032 aaPredicted RBP22.63■■□□□ 1.21
VPS53-216ENST00000574029 GREB1Q4ZG55 1949 aa22.63■■□□□ 1.21
VPS53-216ENST00000574029 TULP1O00294 542 aaPredicted RBP22.62■■□□□ 1.21
VPS53-216ENST00000574029 GABRDO14764 452 aa22.62■■□□□ 1.21
VPS53-216ENST00000574029 IDEP14735 1019 aa22.62■■□□□ 1.21
VPS53-216ENST00000574029 LHX1P48742 406 aa22.62■■□□□ 1.21
VPS53-216ENST00000574029 RBP5P82980 135 aa22.62■■□□□ 1.21
VPS53-216ENST00000574029 CFAP221Q4G0U5 840 aa22.62■■□□□ 1.21
VPS53-216ENST00000574029 BACH2Q9BYV9 841 aa22.62■■□□□ 1.21
VPS53-216ENST00000574029 TMEM206Q9H813 350 aa22.62■■□□□ 1.21
VPS53-216ENST00000574029 FBRSL1Q9HCM7 1045 aaKnown RBP22.62■■□□□ 1.21
VPS53-216ENST00000574029 PDE11AQ9HCR9 933 aa22.62■■□□□ 1.21
VPS53-216ENST00000574029 PANK4Q9NVE7 773 aa22.62■■□□□ 1.21
VPS53-216ENST00000574029 SNX9Q9Y5X1 595 aa22.62■■□□□ 1.21
VPS53-216ENST00000574029 ANAPC1Q9H1A4 1944 aa22.62■■□□□ 1.21
VPS53-216ENST00000574029 EML5Q05BV3 1969 aa22.61■■□□□ 1.21
VPS53-216ENST00000574029 A0A087X0B3 334 aa22.61■■□□□ 1.21
VPS53-216ENST00000574029 GDF9O60383 454 aa22.61■■□□□ 1.21
VPS53-216ENST00000574029 EGFP01133 1207 aa22.61■■□□□ 1.21
VPS53-216ENST00000574029 ADRB1P08588 477 aa22.61■■□□□ 1.21
VPS53-216ENST00000574029 KRT19P08727 400 aa22.61■■□□□ 1.21
VPS53-216ENST00000574029 STAT6P42226 847 aa22.61■■□□□ 1.21
VPS53-216ENST00000574029 CEBPZQ03701 1054 aaKnown RBP22.61■■□□□ 1.21
VPS53-216ENST00000574029 FAM160A1Q05DH4 1040 aa22.61■■□□□ 1.21
VPS53-216ENST00000574029 SOWAHAQ2M3V2 549 aa22.61■■□□□ 1.21
VPS53-216ENST00000574029 ADGRF2Q8IZF7 708 aa22.61■■□□□ 1.21
VPS53-216ENST00000574029 FUBP3Q96I24 572 aaKnown RBP eCLIP22.61■■□□□ 1.21
VPS53-216ENST00000574029 LOXL4Q96JB6 756 aa22.61■■□□□ 1.21
VPS53-216ENST00000574029 MTMR12Q9C0I1 747 aa22.61■■□□□ 1.21
VPS53-216ENST00000574029 PCIF1Q9H4Z3 704 aa22.61■■□□□ 1.21
VPS53-216ENST00000574029 SLC8A2Q9UPR5 921 aa22.61■■□□□ 1.21
VPS53-216ENST00000574029 HCRTO43612 131 aa22.6■■□□□ 1.21
VPS53-216ENST00000574029 RNF40O75150 1001 aa22.6■■□□□ 1.21
VPS53-216ENST00000574029 RPP40O75818 363 aaKnown RBP22.6■■□□□ 1.21
VPS53-216ENST00000574029 PRPF6O94906 941 aaKnown RBP22.6■■□□□ 1.21
VPS53-216ENST00000574029 TMEM191BP0C7N4 346 aa22.6■■□□□ 1.21
VPS53-216ENST00000574029 SYT1P21579 422 aa22.6■■□□□ 1.21
VPS53-216ENST00000574029 DRD1P21728 446 aa22.6■■□□□ 1.21
VPS53-216ENST00000574029 PCSK1P29120 753 aa22.6■■□□□ 1.21
VPS53-216ENST00000574029 PXNP49023 591 aaPredicted RBP22.6■■□□□ 1.21
VPS53-216ENST00000574029 GALK1P51570 392 aa22.6■■□□□ 1.21
VPS53-216ENST00000574029 MTF1Q14872 753 aa22.6■■□□□ 1.21
VPS53-216ENST00000574029 ZNF77Q15935 545 aa22.6■■□□□ 1.21
VPS53-216ENST00000574029 CCDC142Q17RM4 750 aa22.6■■□□□ 1.21
VPS53-216ENST00000574029 FAM171BQ6P995 826 aa22.6■■□□□ 1.21
VPS53-216ENST00000574029 DPH6Q7L8W6 267 aa22.6■■□□□ 1.21
VPS53-216ENST00000574029 LIMS2Q7Z4I7 341 aa22.6■■□□□ 1.21
VPS53-216ENST00000574029 SPATA2LQ8IUW3 424 aaPredicted RBP22.6■■□□□ 1.21
VPS53-216ENST00000574029 GPD1LQ8N335 351 aa22.6■■□□□ 1.21
VPS53-216ENST00000574029 CAMKK1Q8N5S9 505 aa22.6■■□□□ 1.21
VPS53-216ENST00000574029 OSCP1Q8WVF1 389 aa22.6■■□□□ 1.21
VPS53-216ENST00000574029 P2RY13Q9BPV8 354 aa22.6■■□□□ 1.21
VPS53-216ENST00000574029 PANK2Q9BZ23 570 aa22.6■■□□□ 1.21
VPS53-216ENST00000574029 KIAA1549LQ6ZVL6 1849 aa22.59■■□□□ 1.21
VPS53-216ENST00000574029 KIAA0391O15091 583 aaKnown RBP22.59■■□□□ 1.21
VPS53-216ENST00000574029 USP17L7P0C7H9 530 aa22.59■■□□□ 1.21
VPS53-216ENST00000574029 GJA4P35212 333 aa22.59■■□□□ 1.21
VPS53-216ENST00000574029 MAGEA11P43364 429 aa22.59■■□□□ 1.21
VPS53-216ENST00000574029 RAP1GAPP47736 663 aa22.59■■□□□ 1.21
VPS53-216ENST00000574029 SLC39A14Q15043 492 aa22.59■■□□□ 1.21
VPS53-216ENST00000574029 PPM1JQ5JR12 505 aa22.59■■□□□ 1.21
VPS53-216ENST00000574029 CACNA2D4Q7Z3S7 1137 aa22.59■■□□□ 1.21
VPS53-216ENST00000574029 CPA6Q8N4T0 437 aa22.59■■□□□ 1.21
VPS53-216ENST00000574029 NOC3LQ8WTT2 800 aaKnown RBP22.59■■□□□ 1.21
VPS53-216ENST00000574029 USP28Q96RU2 1077 aa22.59■■□□□ 1.21
VPS53-216ENST00000574029 SLC22A12Q96S37 553 aa22.59■■□□□ 1.21
VPS53-216ENST00000574029 CYP2S1Q96SQ9 504 aa22.59■■□□□ 1.21
VPS53-216ENST00000574029 ECT2Q9H8V3 914 aa22.59■■□□□ 1.21
VPS53-216ENST00000574029 TRPC7Q9HCX4 862 aa22.59■■□□□ 1.21
VPS53-216ENST00000574029 INTS13Q9NVM9 706 aa22.59■■□□□ 1.21
VPS53-216ENST00000574029 GCNT4Q9P109 453 aa22.59■■□□□ 1.21
VPS53-216ENST00000574029 MYO16Q9Y6X6 1858 aa22.59■■□□□ 1.21
VPS53-216ENST00000574029 HELZP42694 1942 aaKnown RBP22.59■■□□□ 1.21
VPS53-216ENST00000574029 TRAV19A0A0A6YYK7 116 aa22.58■■□□□ 1.21
VPS53-216ENST00000574029 AXIN1O15169 862 aa22.58■■□□□ 1.21
VPS53-216ENST00000574029 AKAP3O75969 853 aa22.58■■□□□ 1.21
VPS53-216ENST00000574029 EPN2O95208 641 aa22.58■■□□□ 1.21
VPS53-216ENST00000574029 USP4Q13107 963 aa22.58■■□□□ 1.21
VPS53-216ENST00000574029 FBXO43Q4G163 708 aa22.58■■□□□ 1.21
VPS53-216ENST00000574029 NAIF1Q69YI7 327 aaPredicted RBP22.58■■□□□ 1.21
VPS53-216ENST00000574029 KBTBD6Q86V97 674 aa22.58■■□□□ 1.21
VPS53-216ENST00000574029 EXOC4Q96A65 974 aa22.58■■□□□ 1.21
VPS53-216ENST00000574029 ANKRD36BP1Q96IX9 119 aa22.58■■□□□ 1.21
VPS53-216ENST00000574029 ARRDC1-AS1Q9H2J1 176 aa22.58■■□□□ 1.21
VPS53-216ENST00000574029 DUS2Q9NX74 493 aaKnown RBP22.58■■□□□ 1.21
VPS53-216ENST00000574029 ATG2BQ96BY7 2078 aa22.58■■□□□ 1.2
VPS53-216ENST00000574029 PTPRJQ12913 1337 aa22.57■■□□□ 1.2
VPS53-216ENST00000574029 ATP2C2O75185 946 aa22.57■■□□□ 1.2
VPS53-216ENST00000574029 CKMP06732 381 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms