RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 ARHGAP15Q53QZ3 475 aa8.68□□□□□ -1.02
VPS53-214ENST00000572607 CEP135Q66GS9 1140 aa8.68□□□□□ -1.02
VPS53-214ENST00000572607 PARM1Q6UWI2 310 aa8.68□□□□□ -1.02
VPS53-214ENST00000572607 C4orf50Q6ZRC1 276 aa8.68□□□□□ -1.02
VPS53-214ENST00000572607 SPATA2LQ8IUW3 424 aaPredicted RBP8.68□□□□□ -1.02
VPS53-214ENST00000572607 GUF1Q8N442 669 aaKnown RBP8.68□□□□□ -1.02
VPS53-214ENST00000572607 PDCL2Q8N4E4 241 aa8.68□□□□□ -1.02
VPS53-214ENST00000572607 TMEM105Q8N8V8 129 aa8.68□□□□□ -1.02
VPS53-214ENST00000572607 ATAD1Q8NBU5 361 aa8.68□□□□□ -1.02
VPS53-214ENST00000572607 FLCNQ8NFG4 579 aa8.68□□□□□ -1.02
VPS53-214ENST00000572607 SYAP1Q96A49 352 aaPredicted RBP8.68□□□□□ -1.02
VPS53-214ENST00000572607 TMEM209Q96SK2 561 aa8.68□□□□□ -1.02
VPS53-214ENST00000572607 GPR88Q9GZN0 384 aa8.68□□□□□ -1.02
VPS53-214ENST00000572607 SNX25Q9H3E2 840 aa8.68□□□□□ -1.02
VPS53-214ENST00000572607 KCTD10Q9H3F6 313 aa8.68□□□□□ -1.02
VPS53-214ENST00000572607 SMOC2Q9H3U7 446 aa8.68□□□□□ -1.02
VPS53-214ENST00000572607 SLITRK6Q9H5Y7 841 aa8.68□□□□□ -1.02
VPS53-214ENST00000572607 CEP72Q9P209 647 aa8.68□□□□□ -1.02
VPS53-214ENST00000572607 WNT16Q9UBV4 365 aa8.68□□□□□ -1.02
VPS53-214ENST00000572607 SIX4Q9UIU6 781 aa8.68□□□□□ -1.02
VPS53-214ENST00000572607 L1RE1Q9UN81 338 aa8.68□□□□□ -1.02
VPS53-214ENST00000572607 PTPRJQ12913 1337 aa8.68□□□□□ -1.02
VPS53-214ENST00000572607 TRIP11Q15643 1979 aa8.68□□□□□ -1.02
VPS53-214ENST00000572607 ECI2O75521 394 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 VNN2O95498 520 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 P4HA1P13674 534 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 TRIM21P19474 475 aaKnown RBP8.67□□□□□ -1.02
VPS53-214ENST00000572607 NR2F2P24468 414 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 ACAT1P24752 427 aaKnown RBP8.67□□□□□ -1.02
VPS53-214ENST00000572607 CDC25CP30307 473 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 NBL1P41271 181 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 EPHA5P54756 1037 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 RPL10AP62906 217 aaKnown RBP8.67□□□□□ -1.02
VPS53-214ENST00000572607 STIM1Q13586 685 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 WDR72Q3MJ13 1102 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 MSS51Q4VC12 460 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 INTS6LQ5JSJ4 861 aaKnown RBP8.67□□□□□ -1.02
VPS53-214ENST00000572607 PRSS36Q5K4E3 855 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 INTS8Q75QN2 995 aaKnown RBP8.67□□□□□ -1.02
VPS53-214ENST00000572607 DNAJB7Q7Z6W7 309 aaPredicted RBP8.67□□□□□ -1.02
VPS53-214ENST00000572607 FMR1NBQ8N0W7 255 aaPredicted RBP8.67□□□□□ -1.02
VPS53-214ENST00000572607 CYP4X1Q8N118 509 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 SIX5Q8N196 739 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 CCDC150Q8NCX0 1101 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 ST13P5Q8NFI4 369 aaPredicted RBP8.67□□□□□ -1.02
VPS53-214ENST00000572607 OR6B3Q8NGW1 331 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 CXorf38Q8TB03 319 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 TMEM174Q8WUU8 243 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 FGF14Q92915 247 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 SMARCE1Q969G3 411 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 PSMG2Q969U7 264 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 SHDQ96IW2 340 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 FAM84AQ96KN4 292 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 TSG101Q99816 390 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 KXD1Q9BQD3 176 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 RTP3Q9BQQ7 232 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 SYT15Q9BQS2 421 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 PI4K2AQ9BTU6 479 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 CRISPLD1Q9H336 500 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 ATXN3LQ9H3M9 355 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 ZFP14Q9HCL3 533 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 ABCB6Q9NP58 842 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 SLC2A4RGQ9NR83 387 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 NXF1Q9UBU9 619 aaKnown RBP8.67□□□□□ -1.02
VPS53-214ENST00000572607 CDH9Q9ULB4 789 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 CA14Q9ULX7 337 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 MAPK8IP1Q9UQF2 711 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 TRAF3IP3Q9Y228 551 aa8.67□□□□□ -1.02
VPS53-214ENST00000572607 A0A1W2PRU2 124 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 LRRIQ3A6PVS8 624 aaPredicted RBP8.66□□□□□ -1.02
VPS53-214ENST00000572607 MAPK13O15264 365 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 SOAT2O75908 522 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 STAU1O95793 577 aaKnown RBP8.66□□□□□ -1.02
VPS53-214ENST00000572607 FAM163BP0C2L3 166 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 CSH1P0DML2 217 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 CSH2P0DML3 217 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 HAPLN1P10915 354 aaPredicted RBP8.66□□□□□ -1.02
VPS53-214ENST00000572607 WARSP23381 471 aaKnown RBP8.66□□□□□ -1.02
VPS53-214ENST00000572607 ANXA13P27216 316 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 GABRR2P28476 465 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 PSMC2P35998 433 aaKnown RBP8.66□□□□□ -1.02
VPS53-214ENST00000572607 CASP4P49662 377 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 VAMP7P51809 220 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 ADAM9Q13443 819 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 PNOCQ13519 176 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 SNW1Q13573 536 aaKnown RBP8.66□□□□□ -1.02
VPS53-214ENST00000572607 NCOA4Q13772 614 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 TEAD2Q15562 447 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 NFIL3Q16649 462 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 SOWAHAQ2M3V2 549 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 ZNF699Q32M78 642 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 ZNF667Q5HYK9 610 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 LRRTM3Q86VH5 581 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 OSTM1Q86WC4 334 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 YAF2Q8IY57 180 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 FAM186BQ8IYM0 893 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 TTC9BQ8N6N2 239 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 ZSCAN18Q8TBC5 510 aaPredicted RBP8.66□□□□□ -1.02
VPS53-214ENST00000572607 GPR152Q8TDT2 470 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 PARD3BQ8TEW8 1205 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms