RNA–Protein interactions for RNA: ENST00000572043.5

CTDNEP1-207, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 3 BASIC

Gene CTDNEP1, Length 857 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-207ENST00000572043 TRIM49P0CI25 452 aa19■□□□□ 0.63
CTDNEP1-207ENST00000572043 TRIM49CP0CI26 452 aa19■□□□□ 0.63
CTDNEP1-207ENST00000572043 CSH1P0DML2 217 aa19■□□□□ 0.63
CTDNEP1-207ENST00000572043 CSH2P0DML3 217 aa19■□□□□ 0.63
CTDNEP1-207ENST00000572043 BDNFP23560 247 aa19■□□□□ 0.63
CTDNEP1-207ENST00000572043 VAMP7P51809 220 aa19■□□□□ 0.63
CTDNEP1-207ENST00000572043 NUBP1P53384 320 aa19■□□□□ 0.63
CTDNEP1-207ENST00000572043 AP3M2P53677 418 aa19■□□□□ 0.63
CTDNEP1-207ENST00000572043 CLDN10P78369 228 aa19■□□□□ 0.63
CTDNEP1-207ENST00000572043 PRKCQQ04759 706 aa19■□□□□ 0.63
CTDNEP1-207ENST00000572043 FAM160A1Q05DH4 1040 aa19■□□□□ 0.63
CTDNEP1-207ENST00000572043 ZNF667Q5HYK9 610 aa19■□□□□ 0.63
CTDNEP1-207ENST00000572043 C4orf50Q6ZRC1 276 aa19■□□□□ 0.63
CTDNEP1-207ENST00000572043 CCDC105Q8IYK2 499 aa19■□□□□ 0.63
CTDNEP1-207ENST00000572043 PJA1Q8NG27 643 aa19■□□□□ 0.63
CTDNEP1-207ENST00000572043 PCED1BQ96HM7 432 aa19■□□□□ 0.63
CTDNEP1-207ENST00000572043 TASP1Q9H6P5 420 aa19■□□□□ 0.63
CTDNEP1-207ENST00000572043 TRPV4Q9HBA0 871 aa19■□□□□ 0.63
CTDNEP1-207ENST00000572043 TACC1O75410 805 aa18.99■□□□□ 0.63
CTDNEP1-207ENST00000572043 PRAMEF12O95522 483 aa18.99■□□□□ 0.63
CTDNEP1-207ENST00000572043 STAU1O95793 577 aaKnown RBP18.99■□□□□ 0.63
CTDNEP1-207ENST00000572043 GRIK1P39086 918 aa18.99■□□□□ 0.63
CTDNEP1-207ENST00000572043 NLRP12P59046 1061 aa18.99■□□□□ 0.63
CTDNEP1-207ENST00000572043 ADAM9Q13443 819 aa18.99■□□□□ 0.63
CTDNEP1-207ENST00000572043 CFAP221Q4G0U5 840 aa18.99■□□□□ 0.63
CTDNEP1-207ENST00000572043 C1orf220Q5T0J3 134 aa18.99■□□□□ 0.63
CTDNEP1-207ENST00000572043 ISM2Q6H9L7 571 aa18.99■□□□□ 0.63
CTDNEP1-207ENST00000572043 SV2AQ7L0J3 742 aa18.99■□□□□ 0.63
CTDNEP1-207ENST00000572043 TMEM150AQ86TG1 271 aa18.99■□□□□ 0.63
CTDNEP1-207ENST00000572043 MFSD6LQ8IWD5 586 aa18.99■□□□□ 0.63
CTDNEP1-207ENST00000572043 FAM186BQ8IYM0 893 aa18.99■□□□□ 0.63
CTDNEP1-207ENST00000572043 MAB21L3Q8N8X9 362 aa18.99■□□□□ 0.63
CTDNEP1-207ENST00000572043 TTC8Q8TAM2 541 aa18.99■□□□□ 0.63
CTDNEP1-207ENST00000572043 TMC2Q8TDI7 906 aa18.99■□□□□ 0.63
CTDNEP1-207ENST00000572043 TMEM174Q8WUU8 243 aa18.99■□□□□ 0.63
CTDNEP1-207ENST00000572043 DEPDC1BQ8WUY9 529 aa18.99■□□□□ 0.63
CTDNEP1-207ENST00000572043 FUBP3Q96I24 572 aaKnown RBP eCLIP18.99■□□□□ 0.63
CTDNEP1-207ENST00000572043 LRRC3BQ96PB8 259 aa18.99■□□□□ 0.63
CTDNEP1-207ENST00000572043 SLC46A2Q9BY10 475 aa18.99■□□□□ 0.63
CTDNEP1-207ENST00000572043 RMND1Q9NWS8 449 aa18.99■□□□□ 0.63
CTDNEP1-207ENST00000572043 FAM170BA6NMN3 283 aa18.98■□□□□ 0.63
CTDNEP1-207ENST00000572043 F11P03951 625 aa18.98■□□□□ 0.63
CTDNEP1-207ENST00000572043 KRT13P13646 458 aa18.98■□□□□ 0.63
CTDNEP1-207ENST00000572043 PTPN1P18031 435 aaKnown RBP18.98■□□□□ 0.63
CTDNEP1-207ENST00000572043 RPL13P26373 211 aaKnown RBP18.98■□□□□ 0.63
CTDNEP1-207ENST00000572043 PIK3CAP42336 1068 aa18.98■□□□□ 0.63
CTDNEP1-207ENST00000572043 PRCPP42785 496 aa18.98■□□□□ 0.63
CTDNEP1-207ENST00000572043 GCLMP48507 274 aa18.98■□□□□ 0.63
CTDNEP1-207ENST00000572043 MAPRE1Q15691 268 aaKnown RBP18.98■□□□□ 0.63
CTDNEP1-207ENST00000572043 ZACNQ401N2 412 aa18.98■□□□□ 0.63
CTDNEP1-207ENST00000572043 TXNDC8Q6A555 127 aa18.98■□□□□ 0.63
CTDNEP1-207ENST00000572043 SPOPLQ6IQ16 392 aa18.98■□□□□ 0.63
CTDNEP1-207ENST00000572043 MYCBPAPQ8TBZ2 947 aa18.98■□□□□ 0.63
CTDNEP1-207ENST00000572043 DNASE1L2Q92874 299 aa18.98■□□□□ 0.63
CTDNEP1-207ENST00000572043 IRF7Q92985 503 aa18.98■□□□□ 0.63
CTDNEP1-207ENST00000572043 SMARCE1Q969G3 411 aa18.98■□□□□ 0.63
CTDNEP1-207ENST00000572043 ZFYVE19Q96K21 471 aa18.98■□□□□ 0.63
CTDNEP1-207ENST00000572043 SDCBP2Q9H190 292 aa18.98■□□□□ 0.63
CTDNEP1-207ENST00000572043 TRPC7Q9HCX4 862 aa18.98■□□□□ 0.63
CTDNEP1-207ENST00000572043 LTB4R2Q9NPC1 389 aa18.98■□□□□ 0.63
CTDNEP1-207ENST00000572043 PCDHA5Q9Y5H7 936 aa18.98■□□□□ 0.63
CTDNEP1-207ENST00000572043 CLDN5O00501 218 aa18.97■□□□□ 0.63
CTDNEP1-207ENST00000572043 GADD45BO75293 160 aaPredicted RBP18.97■□□□□ 0.63
CTDNEP1-207ENST00000572043 NOL4O94818 638 aa18.97■□□□□ 0.63
CTDNEP1-207ENST00000572043 SMC2O95347 1197 aa18.97■□□□□ 0.63
CTDNEP1-207ENST00000572043 GLULP15104 373 aa18.97■□□□□ 0.63
CTDNEP1-207ENST00000572043 TARSP26639 723 aaKnown RBP18.97■□□□□ 0.63
CTDNEP1-207ENST00000572043 PSMC2P35998 433 aaKnown RBP18.97■□□□□ 0.63
CTDNEP1-207ENST00000572043 ORC1Q13415 861 aa18.97■□□□□ 0.63
CTDNEP1-207ENST00000572043 ANGPT1Q15389 498 aa18.97■□□□□ 0.63
CTDNEP1-207ENST00000572043 NFIL3Q16649 462 aa18.97■□□□□ 0.63
CTDNEP1-207ENST00000572043 ZCWPW2Q504Y3 356 aa18.97■□□□□ 0.63
CTDNEP1-207ENST00000572043 TTC16Q8NEE8 873 aa18.97■□□□□ 0.63
CTDNEP1-207ENST00000572043 MRPS31Q92665 395 aaKnown RBP18.97■□□□□ 0.63
CTDNEP1-207ENST00000572043 E2F7Q96AV8 911 aa18.97■□□□□ 0.63
CTDNEP1-207ENST00000572043 DDX23Q9BUQ8 820 aaKnown RBP18.97■□□□□ 0.63
CTDNEP1-207ENST00000572043 NDRG2Q9UN36 371 aaKnown RBP18.97■□□□□ 0.63
CTDNEP1-207ENST00000572043 TCHHQ07283 1943 aa18.97■□□□□ 0.63
CTDNEP1-207ENST00000572043 TADA3O75528 432 aa18.96■□□□□ 0.63
CTDNEP1-207ENST00000572043 HLA-DRAP01903 254 aa18.96■□□□□ 0.63
CTDNEP1-207ENST00000572043 ANXA13P27216 316 aa18.96■□□□□ 0.63
CTDNEP1-207ENST00000572043 HOXD11P31277 338 aaPredicted RBP18.96■□□□□ 0.63
CTDNEP1-207ENST00000572043 AVPR1AP37288 418 aa18.96■□□□□ 0.63
CTDNEP1-207ENST00000572043 MAGEA11P43364 429 aa18.96■□□□□ 0.63
CTDNEP1-207ENST00000572043 MRE11P49959 708 aa18.96■□□□□ 0.63
CTDNEP1-207ENST00000572043 PPP3CAQ08209 521 aa18.96■□□□□ 0.63
CTDNEP1-207ENST00000572043 SGSM1Q2NKQ1 1148 aa18.96■□□□□ 0.63
CTDNEP1-207ENST00000572043 ZNF658Q5TYW1 1059 aaPredicted RBP18.96■□□□□ 0.63
CTDNEP1-207ENST00000572043 ZNF852Q6ZMS4 543 aa18.96■□□□□ 0.63
CTDNEP1-207ENST00000572043 INTS8Q75QN2 995 aaKnown RBP18.96■□□□□ 0.63
CTDNEP1-207ENST00000572043 CMTM8Q8IZV2 173 aa18.96■□□□□ 0.63
CTDNEP1-207ENST00000572043 B3GALNT2Q8NCR0 500 aa18.96■□□□□ 0.63
CTDNEP1-207ENST00000572043 CSGALNACT1Q8TDX6 532 aa18.96■□□□□ 0.63
CTDNEP1-207ENST00000572043 GSDMAQ96QA5 445 aa18.96■□□□□ 0.63
CTDNEP1-207ENST00000572043 ZNF518BQ9C0D4 1074 aa18.96■□□□□ 0.63
CTDNEP1-207ENST00000572043 IRF2BPLQ9H1B7 796 aa18.96■□□□□ 0.63
CTDNEP1-207ENST00000572043 VRTNQ9H8Y1 702 aa18.96■□□□□ 0.63
CTDNEP1-207ENST00000572043 DLGAP2Q9P1A6 1054 aa18.96■□□□□ 0.63
CTDNEP1-207ENST00000572043 HOOK1Q9UJC3 728 aaKnown RBP18.96■□□□□ 0.63
CTDNEP1-207ENST00000572043 PIAS3Q9Y6X2 628 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms