RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 FAM49BQ9NUQ9 324 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 AFF4Q9UHB7 1163 aaKnown RBP9.89□□□□□ -0.83
VPS35-211ENST00000569950 CDH22Q9UJ99 828 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 SSX2IPQ9Y2D8 614 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 A0A1W2PQJ5 194 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 HHLA1C9JL84 531 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 TULP2O00295 520 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 CYP26A1O43174 497 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 RFPL2O75678 378 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 ADH1AP07327 375 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 PAEPP09466 180 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 HAPLN1P10915 354 aaPredicted RBP9.88□□□□□ -0.83
VPS35-211ENST00000569950 RFX1P22670 979 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 CYP2F1P24903 491 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 BRD2P25440 801 aaKnown RBP9.88□□□□□ -0.83
VPS35-211ENST00000569950 GPR15P49685 360 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 MFAP3P55082 362 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 ARPP19P56211 112 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 CREMQ03060 361 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 ADCY1Q08828 1119 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 GOLGA8FQ08AF8 430 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 GOLGA8DPQ0D2H9 430 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 FILIP1LQ4L180 1135 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 HGSNATQ68CP4 663 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 ARHGAP17Q68EM7 881 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 FAM35AQ86V20 835 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 SLC47A2Q86VL8 602 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 THEM5Q8N1Q8 247 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 WDTC1Q8N5D0 677 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 KREMEN2Q8NCW0 462 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 CCDC150Q8NCX0 1101 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 STKLD1Q8NE28 680 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 HNRNPABQ99729 332 aaKnown RBP9.88□□□□□ -0.83
VPS35-211ENST00000569950 SMOQ99835 787 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 LRRC3Q9BY71 257 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 CSNK1G1Q9HCP0 422 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 ABCB6Q9NP58 842 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 CYTH4Q9UIA0 394 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 CAPN11Q9UMQ6 739 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 R3HCC1Q9Y3T6 440 aaKnown RBP9.88□□□□□ -0.83
VPS35-211ENST00000569950 PCDHB4Q9Y5E5 795 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 A0A0C4DFX4 3053 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 VCANP13611 3396 aa9.88□□□□□ -0.83
VPS35-211ENST00000569950 BDP1A6H8Y1 2624 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.87□□□□□ -0.83
VPS35-211ENST00000569950 LRRC53A6NM62 1247 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 TNFRSF10BO14763 440 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 GLUD1P00367 558 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 TPM2P07951 284 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 CPB1P15086 417 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 IGFBP4P22692 258 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 KLRC2P26717 231 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 HNRNPH3P31942 346 aaKnown RBP9.87□□□□□ -0.83
VPS35-211ENST00000569950 SOX5P35711 763 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 MAGEA11P43364 429 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 TSPY1Q01534 308 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 DUSP4Q13115 394 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 RAPGEF1Q13905 1077 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 SPECC1LQ69YQ0 1117 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 LLGL2Q6P1M3 1020 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 WDR59Q6PJI9 974 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 CLEC20AQ6ZU45 233 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 GPRIN1Q7Z2K8 1008 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 NOP9Q86U38 636 aaKnown RBP9.87□□□□□ -0.83
VPS35-211ENST00000569950 TTC39CQ8N584 583 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 NEK11Q8NG66 645 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 SLC2A14Q8TDB8 520 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 EPS8L1Q8TE68 723 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 SLC20A1Q8WUM9 679 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 ZNF606Q8WXB4 792 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 FUBP3Q96I24 572 aaKnown RBP eCLIP9.87□□□□□ -0.83
VPS35-211ENST00000569950 KCNK16Q96T55 309 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 CDCA3Q99618 268 aaPredicted RBP9.87□□□□□ -0.83
VPS35-211ENST00000569950 EMILIN2Q9BXX0 1053 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 EDEM3Q9BZQ6 932 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 TRIM5Q9C035 493 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 S1PR5Q9H228 398 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 GRPEL1Q9HAV7 217 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 MAN1C1Q9NR34 630 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 HSFX1Q9UBD0 423 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 MYO6Q9UM54 1294 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.87□□□□□ -0.83
VPS35-211ENST00000569950 SLC27A5Q9Y2P5 690 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 DAAM1Q9Y4D1 1078 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 YIPF1Q9Y548 306 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 INSL5Q9Y5Q6 135 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 NCOR1O75376 2440 aa9.87□□□□□ -0.83
VPS35-211ENST00000569950 CBFA2T2O43439 604 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 ZMYND10O75800 440 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 GFPT2O94808 682 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 ADCY5O95622 1261 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 POU2F2P09086 479 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 VDRP11473 427 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 KRT5P13647 590 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 FOSL2P15408 326 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 CYP11B1P15538 503 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 HMGA1P17096 107 aaKnown RBP9.86□□□□□ -0.83
VPS35-211ENST00000569950 BDNFP23560 247 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 CASP14P31944 242 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 SSTR3P32745 418 aaPredicted RBP9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms