RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	SPOCD1	Q6ZMY3	1216 aa		11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	FAM71A	Q8IYT1	594 aa		11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	KREMEN1	Q96MU8	473 aa		11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	PIDD1	Q9HB75	910 aa		11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	CASZ1	Q86V15	1759 aa		11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	SPEF2	Q9C093	1822 aa		11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	GARS	P41250	739 aa	Known RBP	11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	PRAME	P78395	509 aa		11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	ORC1	Q13415	861 aa		11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	TFDP3	Q5H9I0	405 aa		11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	TLDC1	Q6P9B6	456 aa		11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	ALYREF	Q86V81	257 aa	Known RBP	11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	APLF	Q8IW19	511 aa	Predicted RBP	11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	ASAP3	Q8TDY4	903 aa		11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	MPP4	Q96JB8	637 aa		11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	WASF2	Q9Y6W5	498 aa		11.92	□□□□□ -0.5
CLN3-238	ENST00000569430	ARHGAP10	A1A4S6	786 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	C2CD2L	O14523	706 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	ADRB2	P07550	413 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	NPTX2	P47972	431 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	MCL1	Q07820	350 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	ZNF699	Q32M78	642 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	TRMT5	Q32P41	509 aa	Known RBP	11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	MCPH1	Q8NEM0	835 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	MXRA8	Q9BRK3	442 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	TRPV6	Q9H1D0	765 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	AKAP11	Q9UKA4	1901 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	APPL1	Q9UKG1	709 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	MYH7	P12883	1935 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	ZNF142	P52746	1687 aa	Predicted RBP	11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	CYP1A2	P05177	515 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	OSBP	P22059	807 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	TBXAS1	P24557	533 aa	Predicted RBP	11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	COPA	P53621	1224 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	VCP	P55072	806 aa	Known RBP	11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	RARS2	Q5T160	578 aa	Known RBP	11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	TTC7B	Q86TV6	843 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	ZBTB8OS	Q8IWT0	167 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	CDAN1	Q8IWY9	1227 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	LARGE2	Q8N3Y3	721 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	RNF148	Q8N7C7	305 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	TARS2	Q9BW92	718 aa	Known RBP	11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	CADM1	Q9BY67	442 aa	Known RBP	11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	KCNG1	Q9UIX4	513 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	HOXD13	P35453	343 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	SLC12A2	P55011	1212 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	SLC25A3	Q00325	362 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	ANKRD20A4	Q4UJ75	823 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	FSCB	Q5H9T9	825 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	PPP1R2P3	Q6NXS1	205 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	CCNYL1	Q8N7R7	359 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	SEMA4D	Q92854	862 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	GCNA	Q96QF7	691 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	MECR	Q9BV79	373 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	PPCS	Q9HAB8	311 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	TAGLN3	Q9UI15	199 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	DTNA	Q9Y4J8	743 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	ACTL7B	Q9Y614	415 aa		11.91	□□□□□ -0.5
CLN3-238	ENST00000569430	CCDC78	A2IDD5	438 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	LIN7A	O14910	233 aa	Predicted RBP	11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	SEC24D	O94855	1032 aa	Predicted RBP	11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	RARRES1	P49788	294 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	RPL7A	P62424	266 aa	Known RBP	11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	KBTBD12	Q3ZCT8	623 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	ACSBG2	Q5FVE4	666 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	RIPOR1	Q6ZS17	1223 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	MCU	Q8NE86	351 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	PPP2R3C	Q969Q6	453 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	SRPK1	Q96SB4	655 aa	Known RBP	11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	HSD17B14	Q9BPX1	270 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	GORASP1	Q9BQQ3	440 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	KCNQ5	Q9NR82	932 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	HESX1	Q9UBX0	185 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	ZNF212	Q9UDV6	495 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	DNAJC16	Q9Y2G8	782 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	ADAMTS7	Q9UKP4	1686 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	KBTBD13	C9JR72	458 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	WFS1	O76024	890 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	RPL10A	P62906	217 aa	Known RBP	11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	IGBP1	P78318	339 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	POU5F1	Q01860	360 aa	Known RBP	11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	PIGH	Q14442	188 aa	Predicted RBP	11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	EFHC1	Q5JVL4	640 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	SHC3	Q92529	594 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	NDN	Q99608	321 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	NMUR2	Q9GZQ4	415 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	CCDC134	Q9H6E4	229 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	TLK1	Q9UKI8	766 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	TM9SF1	O15321	606 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	CLPTM1	O96005	669 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	PSAP	P07602	524 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	LINGO3	P0C6S8	592 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	EEF1B2	P24534	225 aa	Known RBP	11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	JAK3	P52333	1124 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	CUL2	Q13617	745 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	MAPK6	Q16659	721 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	BMT2	Q1RMZ1	405 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	WDR72	Q3MJ13	1102 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	ZNF667	Q5HYK9	610 aa		11.9	□□□□□ -0.5
CLN3-238	ENST00000569430	TTC39B	Q5VTQ0	682 aa	Predicted RBP	11.9	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms