RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 TAF12Q16514 161 aa11.6□□□□□ -0.55
VPS39-208ENST00000564994 KMT5BQ4FZB7 885 aa11.6□□□□□ -0.55
VPS39-208ENST00000564994 CFAP221Q4G0U5 840 aa11.6□□□□□ -0.55
VPS39-208ENST00000564994 WDR44Q5JSH3 913 aa11.6□□□□□ -0.55
VPS39-208ENST00000564994 YAF2Q8IY57 180 aa11.6□□□□□ -0.55
VPS39-208ENST00000564994 TTC8Q8TAM2 541 aa11.6□□□□□ -0.55
VPS39-208ENST00000564994 RIN3Q8TB24 985 aa11.6□□□□□ -0.55
VPS39-208ENST00000564994 FAM3CQ92520 227 aa11.6□□□□□ -0.55
VPS39-208ENST00000564994 SPATA32Q96LK8 384 aa11.6□□□□□ -0.55
VPS39-208ENST00000564994 GCNAQ96QF7 691 aa11.6□□□□□ -0.55
VPS39-208ENST00000564994 SYT15Q9BQS2 421 aa11.6□□□□□ -0.55
VPS39-208ENST00000564994 MRPL45Q9BRJ2 306 aaKnown RBP11.6□□□□□ -0.55
VPS39-208ENST00000564994 ABCB6Q9NP58 842 aa11.6□□□□□ -0.55
VPS39-208ENST00000564994 CRTAC1Q9NQ79 661 aa11.6□□□□□ -0.55
VPS39-208ENST00000564994 OBP2AQ9NY56 170 aa11.6□□□□□ -0.55
VPS39-208ENST00000564994 GTSE1Q9NYZ3 720 aa11.6□□□□□ -0.55
VPS39-208ENST00000564994 MAGED2Q9UNF1 606 aaPredicted RBP11.6□□□□□ -0.55
VPS39-208ENST00000564994 MRPS17Q9Y2R5 130 aaKnown RBP11.6□□□□□ -0.55
VPS39-208ENST00000564994 FAM237AA0A1B0GTK4 181 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 DPYSL4O14531 572 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 NCAM2O15394 837 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 EXOC3O60645 756 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 PDGFRBP09619 1106 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 PRR29P0C7W0 189 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 CSH1P0DML2 217 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 CSH2P0DML3 217 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 CHRNB1P11230 501 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 WARSP23381 471 aaKnown RBP11.59□□□□□ -0.55
VPS39-208ENST00000564994 PCSK1P29120 753 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 NDUFA8P51970 172 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 MLLT6P55198 1093 aaPredicted RBP11.59□□□□□ -0.55
VPS39-208ENST00000564994 RPL10AP62906 217 aaKnown RBP11.59□□□□□ -0.55
VPS39-208ENST00000564994 KRT85P78386 507 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 CSTF1Q05048 431 aaKnown RBP11.59□□□□□ -0.55
VPS39-208ENST00000564994 TNK2Q07912 1038 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 MTAPQ13126 283 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 ARHGAP29Q52LW3 1261 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 TXNDC8Q6A555 127 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 TXNDC11Q6PKC3 985 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 TSSK4Q6SA08 328 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 SPATA2LQ8IUW3 424 aaPredicted RBP11.59□□□□□ -0.55
VPS39-208ENST00000564994 CMTM8Q8IZV2 173 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 ADSSL1Q8N142 457 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 MAB21L3Q8N8X9 362 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 BPIFB1Q8TDL5 484 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 CSGALNACT1Q8TDX6 532 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 MYLPFQ96A32 169 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 FUBP3Q96I24 572 aaKnown RBP eCLIP11.59□□□□□ -0.55
VPS39-208ENST00000564994 MYRFLQ96LU7 910 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 FNBP1Q96RU3 617 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 MMS19Q96T76 1030 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 XYLT2Q9H1B5 865 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 CHRDQ9H2X0 955 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 KCTD10Q9H3F6 313 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 LMAN1LQ9HAT1 526 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 DMAC2Q9NW81 257 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 CGNQ9P2M7 1197 aaKnown RBP11.59□□□□□ -0.55
VPS39-208ENST00000564994 FBXO4Q9UKT5 387 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 CDH9Q9ULB4 789 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 CCL26Q9Y258 94 aa11.59□□□□□ -0.55
VPS39-208ENST00000564994 R3HCC1Q9Y3T6 440 aaKnown RBP11.59□□□□□ -0.55
VPS39-208ENST00000564994 DNAH14Q0VDD8 3507 aa11.58□□□□□ -0.56
VPS39-208ENST00000564994 SPECC1L-ADORA2AF8WAN1 911 aa11.58□□□□□ -0.56
VPS39-208ENST00000564994 TACC1O75410 805 aa11.58□□□□□ -0.56
VPS39-208ENST00000564994 STAU1O95793 577 aaKnown RBP11.58□□□□□ -0.56
VPS39-208ENST00000564994 MAGEA11P43364 429 aa11.58□□□□□ -0.56
VPS39-208ENST00000564994 SYKP43405 635 aa11.58□□□□□ -0.56
VPS39-208ENST00000564994 KPNA1P52294 538 aaPredicted RBP11.58□□□□□ -0.56
VPS39-208ENST00000564994 MYL6P60660 151 aa11.58□□□□□ -0.56
VPS39-208ENST00000564994 GAS6Q14393 721 aa11.58□□□□□ -0.56
VPS39-208ENST00000564994 ZNF528Q3MIS6 628 aa11.58□□□□□ -0.56
VPS39-208ENST00000564994 MON1AQ86VX9 555 aa11.58□□□□□ -0.56
VPS39-208ENST00000564994 SLC9A9Q8IVB4 645 aa11.58□□□□□ -0.56
VPS39-208ENST00000564994 SCN4BQ8IWT1 228 aa11.58□□□□□ -0.56
VPS39-208ENST00000564994 CELF5Q8N6W0 485 aaKnown RBP11.58□□□□□ -0.56
VPS39-208ENST00000564994 NELL1Q92832 810 aa11.58□□□□□ -0.56
VPS39-208ENST00000564994 USP13Q92995 863 aaPredicted RBP11.58□□□□□ -0.56
VPS39-208ENST00000564994 ELMO3Q96BJ8 720 aa11.58□□□□□ -0.56
VPS39-208ENST00000564994 TRMT2BQ96GJ1 504 aaKnown RBP11.58□□□□□ -0.56
VPS39-208ENST00000564994 PCED1BQ96HM7 432 aa11.58□□□□□ -0.56
VPS39-208ENST00000564994 SEMA4AQ9H3S1 761 aa11.58□□□□□ -0.56
VPS39-208ENST00000564994 PRMT8Q9NR22 394 aaPredicted RBP11.58□□□□□ -0.56
VPS39-208ENST00000564994 EXOC1Q9NV70 894 aa11.58□□□□□ -0.56
VPS39-208ENST00000564994 USP25Q9UHP3 1055 aa11.58□□□□□ -0.56
VPS39-208ENST00000564994 CEP250Q9BV73 2442 aa11.58□□□□□ -0.56
VPS39-208ENST00000564994 MYH10P35580 1976 aa11.58□□□□□ -0.56
VPS39-208ENST00000564994 OTOL1A6NHN0 477 aaPredicted RBP11.57□□□□□ -0.56
VPS39-208ENST00000564994 LRRIQ3A6PVS8 624 aaPredicted RBP11.57□□□□□ -0.56
VPS39-208ENST00000564994 LMNAP02545 664 aaKnown RBP11.57□□□□□ -0.56
VPS39-208ENST00000564994 C4BPAP04003 597 aaKnown RBP11.57□□□□□ -0.56
VPS39-208ENST00000564994 RPN1P04843 607 aaKnown RBP11.57□□□□□ -0.56
VPS39-208ENST00000564994 TDGF1P13385 188 aa11.57□□□□□ -0.56
VPS39-208ENST00000564994 BDNFP23560 247 aa11.57□□□□□ -0.56
VPS39-208ENST00000564994 DDX6P26196 483 aaKnown RBP eCLIP11.57□□□□□ -0.56
VPS39-208ENST00000564994 CTHP32929 405 aa11.57□□□□□ -0.56
VPS39-208ENST00000564994 GNL1P36915 607 aaPredicted RBP11.57□□□□□ -0.56
VPS39-208ENST00000564994 AVPR1AP37288 418 aa11.57□□□□□ -0.56
VPS39-208ENST00000564994 CACNA2D1P54289 1103 aa11.57□□□□□ -0.56
VPS39-208ENST00000564994 DLG4P78352 724 aa11.57□□□□□ -0.56
VPS39-208ENST00000564994 CLDN10P78369 228 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms