RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 TBC1D22AQ8WUA7 517 aa5.68□□□□□ -1.5
VPS35P1-201ENST00000563400 ISL2Q96A47 359 aa5.68□□□□□ -1.5
VPS35P1-201ENST00000563400 ZNF764Q96H86 408 aaPredicted RBP5.68□□□□□ -1.5
VPS35P1-201ENST00000563400 TEX13AQ9BXU3 409 aaPredicted RBP5.68□□□□□ -1.5
VPS35P1-201ENST00000563400 EDEM3Q9BZQ6 932 aa5.68□□□□□ -1.5
VPS35P1-201ENST00000563400 VPS33BQ9H267 617 aa5.68□□□□□ -1.5
VPS35P1-201ENST00000563400 TAF1DQ9H5J8 278 aaPredicted RBP5.68□□□□□ -1.5
VPS35P1-201ENST00000563400 SUGCTQ9HAC7 445 aa5.68□□□□□ -1.5
VPS35P1-201ENST00000563400 RAD18Q9NS91 495 aa5.68□□□□□ -1.5
VPS35P1-201ENST00000563400 AFF4Q9UHB7 1163 aaKnown RBP5.68□□□□□ -1.5
VPS35P1-201ENST00000563400 RASAL2Q9UJF2 1139 aa5.68□□□□□ -1.5
VPS35P1-201ENST00000563400 PSAT1Q9Y617 370 aa5.68□□□□□ -1.5
VPS35P1-201ENST00000563400 CFAP20Q9Y6A4 193 aaKnown RBP5.68□□□□□ -1.5
VPS35P1-201ENST00000563400 COL14A1Q05707 1796 aaKnown RBP5.68□□□□□ -1.5
VPS35P1-201ENST00000563400 TOPAZ1Q8N9V7 1692 aa5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 BTBD11A6QL63 1104 aa5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 GTPBP1O00178 669 aaKnown RBP5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 FCHO1O14526 889 aa5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 KIAA0355O15063 1070 aa5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 SIGLEC6O43699 453 aa5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 ATP5BP06576 529 aaKnown RBP5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 NR2F1P10589 423 aa5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 GSPT1P15170 499 aaKnown RBP5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 BCL6P41182 706 aa5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 KCNC1P48547 511 aa5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 GALNT2Q10471 571 aa5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 CHAF1BQ13112 559 aa5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 NR0B2Q15466 257 aa5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 TBCEQ15813 527 aaPredicted RBP5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 RAB12Q6IQ22 244 aa5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 KLHDC10Q6PID8 442 aa5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 CCDC73Q6ZRK6 1079 aa5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 PRPF39Q86UA1 669 aaKnown RBP5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 SLC44A2Q8IWA5 706 aaPredicted RBP5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 FAM20CQ8IXL6 584 aa5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 ARMC10Q8N2F6 343 aa5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 TTC39CQ8N584 583 aa5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 SRBD1Q8N5C6 995 aaKnown RBP5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 SMG8Q8ND04 991 aaKnown RBP5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 THAP4Q8WY91 577 aa5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 EID2BQ96D98 161 aa5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 MTFMTQ96DP5 389 aaKnown RBP5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 NEIL1Q96FI4 390 aaPredicted RBP5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 CALML4Q96GE6 196 aa5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 PPP1R9BQ96SB3 815 aa5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 DMRTA2Q96SC8 542 aa5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 P2RX7Q99572 595 aaKnown RBP5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 ASPNQ9BXN1 380 aa5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 TMPRSS13Q9BYE2 586 aa5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 PABPC3Q9H361 631 aaKnown RBP5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 SEPSECSQ9HD40 501 aaKnown RBP5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 ZFP64Q9NPA5 681 aa5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 INCENPQ9NQS7 918 aa5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 COMMD8Q9NX08 183 aa5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 CLDND1Q9NY35 253 aa5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 PRR13Q9NZ81 148 aa5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 CLCA2Q9UQC9 943 aa5.67□□□□□ -1.5
VPS35P1-201ENST00000563400 RGPD8O14715 1765 aaPredicted RBP5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 SLIT2O94813 1529 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 ERICH4A6NGS2 130 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 ERVV-2B6SEH9 535 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 PLOD2O00469 737 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 SLC16A6O15403 523 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 ENDOD1O94919 500 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 APOL3O95236 402 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 PLATP00750 562 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 IGLV1-40P01703 118 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 MT-ND5P03915 603 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 ANXA2P07355 339 aaKnown RBP5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 GNAT1P11488 350 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 P4HA1P13674 534 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 TYRP14679 529 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 EN2P19622 333 aaPredicted RBP5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 NNMTP40261 264 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 WASP42768 502 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 MSH2P43246 934 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 TEFQ10587 303 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 LSAMPQ13449 338 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 EPHA7Q15375 998 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 TBCCQ15814 346 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 ADRM1Q16186 407 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 ZNF674Q2M3X9 581 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 C5orf22Q49AR2 442 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 FLYWCH1Q4VC44 716 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 CATSPEREQ5SY80 951 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 THEMIS2Q5TEJ8 643 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 CWF19L1Q69YN2 538 aaKnown RBP5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 DCLRE1AQ6PJP8 1040 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 CATSPERGQ6ZRH7 1159 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 BEND4Q6ZU67 534 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 BBS12Q6ZW61 710 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 H1FNTQ75WM6 255 aaPredicted RBP5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 RRAGAQ7L523 313 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 ZNF804AQ7Z570 1209 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 PXKQ7Z7A4 578 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 CPLX4Q7Z7G2 160 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 CPNE8Q86YQ8 564 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 CCDC117Q8IWD4 279 aaPredicted RBP5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 TTC5Q8N0Z6 440 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 CHST13Q8NET6 341 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms