RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 FANK1Q8TC84 345 aa8.84□□□□□ -0.99
USP3-211ENST00000559257 U2AF1L4Q8WU68 220 aaKnown RBP8.84□□□□□ -0.99
USP3-211ENST00000559257 ANKS1AQ92625 1134 aa8.84□□□□□ -0.99
USP3-211ENST00000559257 TP53INP1Q96A56 240 aa8.84□□□□□ -0.99
USP3-211ENST00000559257 TOE1Q96GM8 510 aaKnown RBP8.84□□□□□ -0.99
USP3-211ENST00000559257 RANBP9Q96S59 729 aa8.84□□□□□ -0.99
USP3-211ENST00000559257 ZNF717Q9BY31 904 aaPredicted RBP8.84□□□□□ -0.99
USP3-211ENST00000559257 PITHD1Q9GZP4 211 aaPredicted RBP8.84□□□□□ -0.99
USP3-211ENST00000559257 PLEKHA5Q9HAU0 1116 aa8.84□□□□□ -0.99
USP3-211ENST00000559257 IL37Q9NZH6 218 aa8.84□□□□□ -0.99
USP3-211ENST00000559257 PTPRUQ92729 1446 aa8.83□□□□□ -1
USP3-211ENST00000559257 BCL9LQ86UU0 1499 aa8.83□□□□□ -1
USP3-211ENST00000559257 RICTORQ6R327 1708 aa8.83□□□□□ -1
USP3-211ENST00000559257 C17orf113A0A1B0GUU1 675 aa8.83□□□□□ -1
USP3-211ENST00000559257 LACTBL1A8MY62 500 aa8.83□□□□□ -1
USP3-211ENST00000559257 EVPLLA8MZ36 301 aa8.83□□□□□ -1
USP3-211ENST00000559257 BTBD18B2RXH4 712 aa8.83□□□□□ -1
USP3-211ENST00000559257 ATP6V1G2-DDX39BF2Z307 99 aa8.83□□□□□ -1
USP3-211ENST00000559257 MAGEB2O15479 319 aa8.83□□□□□ -1
USP3-211ENST00000559257 PJA2O43164 708 aa8.83□□□□□ -1
USP3-211ENST00000559257 KATNA1O75449 491 aa8.83□□□□□ -1
USP3-211ENST00000559257 KRT7P08729 469 aa8.83□□□□□ -1
USP3-211ENST00000559257 THRAP10827 490 aa8.83□□□□□ -1
USP3-211ENST00000559257 ZNF23P17027 643 aa8.83□□□□□ -1
USP3-211ENST00000559257 PLCG1P19174 1290 aa8.83□□□□□ -1
USP3-211ENST00000559257 DNAJB2P25686 324 aa8.83□□□□□ -1
USP3-211ENST00000559257 BMPR1AP36894 532 aa8.83□□□□□ -1
USP3-211ENST00000559257 PHKA1P46020 1223 aa8.83□□□□□ -1
USP3-211ENST00000559257 PRAMEP78395 509 aa8.83□□□□□ -1
USP3-211ENST00000559257 POU5F1BQ06416 359 aa8.83□□□□□ -1
USP3-211ENST00000559257 KCNMA1Q12791 1236 aa8.83□□□□□ -1
USP3-211ENST00000559257 COASYQ13057 564 aa8.83□□□□□ -1
USP3-211ENST00000559257 TRIM28Q13263 835 aaKnown RBP8.83□□□□□ -1
USP3-211ENST00000559257 SPA17Q15506 151 aa8.83□□□□□ -1
USP3-211ENST00000559257 TRADDQ15628 312 aa8.83□□□□□ -1
USP3-211ENST00000559257 C6orf163Q5TEZ5 329 aa8.83□□□□□ -1
USP3-211ENST00000559257 GGT6Q6P531 493 aa8.83□□□□□ -1
USP3-211ENST00000559257 LPCAT2Q7L5N7 544 aa8.83□□□□□ -1
USP3-211ENST00000559257 LIMS2Q7Z4I7 341 aa8.83□□□□□ -1
USP3-211ENST00000559257 REXO1Q8N1G1 1221 aaKnown RBP8.83□□□□□ -1
USP3-211ENST00000559257 CCNYL1Q8N7R7 359 aa8.83□□□□□ -1
USP3-211ENST00000559257 SIMC1Q8NDZ2 872 aa8.83□□□□□ -1
USP3-211ENST00000559257 GRPEL2Q8TAA5 225 aa8.83□□□□□ -1
USP3-211ENST00000559257 SPATA20Q8TB22 786 aa8.83□□□□□ -1
USP3-211ENST00000559257 ZNF398Q8TD17 642 aa8.83□□□□□ -1
USP3-211ENST00000559257 MCUR1Q96AQ8 359 aa8.83□□□□□ -1
USP3-211ENST00000559257 SLC4A5Q9BY07 1137 aa8.83□□□□□ -1
USP3-211ENST00000559257 AZI2Q9H6S1 392 aa8.83□□□□□ -1
USP3-211ENST00000559257 NTN4Q9HB63 628 aa8.83□□□□□ -1
USP3-211ENST00000559257 CASS4Q9NQ75 786 aa8.83□□□□□ -1
USP3-211ENST00000559257 LRRC4BQ9NT99 713 aa8.83□□□□□ -1
USP3-211ENST00000559257 SACM1LQ9NTJ5 587 aa8.83□□□□□ -1
USP3-211ENST00000559257 UCKL1Q9NWZ5 548 aa8.83□□□□□ -1
USP3-211ENST00000559257 SMARCAL1Q9NZC9 954 aa8.83□□□□□ -1
USP3-211ENST00000559257 DTLQ9NZJ0 730 aa8.83□□□□□ -1
USP3-211ENST00000559257 POLG2Q9UHN1 485 aa8.83□□□□□ -1
USP3-211ENST00000559257 PFDN2Q9UHV9 154 aa8.83□□□□□ -1
USP3-211ENST00000559257 GMEB2Q9UKD1 530 aa8.83□□□□□ -1
USP3-211ENST00000559257 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.83□□□□□ -1
USP3-211ENST00000559257 CACNG2Q9Y698 323 aa8.83□□□□□ -1
USP3-211ENST00000559257 PSME4Q14997 1843 aa8.83□□□□□ -1
USP3-211ENST00000559257 CD163L1Q9NR16 1453 aa8.83□□□□□ -1
USP3-211ENST00000559257 C1orf232A0A0U1RR37 186 aa8.82□□□□□ -1
USP3-211ENST00000559257 PTPDC1A2A3K4 754 aa8.82□□□□□ -1
USP3-211ENST00000559257 NUTM2BA6NNL0 878 aaPredicted RBP8.82□□□□□ -1
USP3-211ENST00000559257 NUTM2EB1AL46 878 aaPredicted RBP8.82□□□□□ -1
USP3-211ENST00000559257 CFAP99D6REC4 459 aa8.82□□□□□ -1
USP3-211ENST00000559257 RNF103O00237 685 aa8.82□□□□□ -1
USP3-211ENST00000559257 PDPK1O15530 556 aa8.82□□□□□ -1
USP3-211ENST00000559257 EPN2O95208 641 aa8.82□□□□□ -1
USP3-211ENST00000559257 BMP10O95393 424 aa8.82□□□□□ -1
USP3-211ENST00000559257 RRM2P31350 389 aa8.82□□□□□ -1
USP3-211ENST00000559257 HCAR3P49019 387 aa8.82□□□□□ -1
USP3-211ENST00000559257 VBP1P61758 197 aa8.82□□□□□ -1
USP3-211ENST00000559257 SCRN3Q0VDG4 424 aa8.82□□□□□ -1
USP3-211ENST00000559257 MOGSQ13724 837 aa8.82□□□□□ -1
USP3-211ENST00000559257 THOC5Q13769 683 aaKnown RBP8.82□□□□□ -1
USP3-211ENST00000559257 TTF1Q15361 905 aaPredicted RBP8.82□□□□□ -1
USP3-211ENST00000559257 LETM2Q2VYF4 491 aa8.82□□□□□ -1
USP3-211ENST00000559257 ALFQ53S48 1182 aa8.82□□□□□ -1
USP3-211ENST00000559257 HABP4Q5JVS0 413 aaKnown RBP8.82□□□□□ -1
USP3-211ENST00000559257 USPL1Q5W0Q7 1092 aa8.82□□□□□ -1
USP3-211ENST00000559257 GTF2IRD2BQ6EKJ0 949 aa8.82□□□□□ -1
USP3-211ENST00000559257 TMEM132EQ6IEE7 984 aa8.82□□□□□ -1
USP3-211ENST00000559257 OGFOD2Q6N063 350 aa8.82□□□□□ -1
USP3-211ENST00000559257 ATG9AQ7Z3C6 839 aa8.82□□□□□ -1
USP3-211ENST00000559257 GTF2IRD2Q86UP8 949 aa8.82□□□□□ -1
USP3-211ENST00000559257 CCDC25Q86WR0 208 aa8.82□□□□□ -1
USP3-211ENST00000559257 LRRC6Q86X45 466 aa8.82□□□□□ -1
USP3-211ENST00000559257 ASCC1Q8N9N2 400 aaKnown RBP8.82□□□□□ -1
USP3-211ENST00000559257 FAM172AQ8WUF8 416 aa8.82□□□□□ -1
USP3-211ENST00000559257 SPOCK2Q92563 424 aa8.82□□□□□ -1
USP3-211ENST00000559257 TGS1Q96RS0 853 aaKnown RBP8.82□□□□□ -1
USP3-211ENST00000559257 RMND5AQ9H871 391 aa8.82□□□□□ -1
USP3-211ENST00000559257 VPS37BQ9H9H4 285 aa8.82□□□□□ -1
USP3-211ENST00000559257 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.82□□□□□ -1
USP3-211ENST00000559257 PIH1D1Q9NWS0 290 aaKnown RBP8.82□□□□□ -1
USP3-211ENST00000559257 PAQR5Q9NXK6 330 aaPredicted RBP8.82□□□□□ -1
USP3-211ENST00000559257 SNTG2Q9NY99 539 aa8.82□□□□□ -1
USP3-211ENST00000559257 SLC12A7Q9Y666 1083 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms