RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 TDRD12Q587J7 1177 aaKnown RBP10.21□□□□□ -0.77
CUX1-216ENST00000558469 PPP1R26Q5T8A7 1209 aaPredicted RBP10.21□□□□□ -0.77
CUX1-216ENST00000558469 TAF3Q5VWG9 929 aa10.21□□□□□ -0.77
CUX1-216ENST00000558469 SMYD5Q6GMV2 418 aa10.21□□□□□ -0.77
CUX1-216ENST00000558469 FAM171BQ6P995 826 aa10.21□□□□□ -0.77
CUX1-216ENST00000558469 WDR59Q6PJI9 974 aa10.21□□□□□ -0.77
CUX1-216ENST00000558469 NOP9Q86U38 636 aaKnown RBP10.21□□□□□ -0.77
CUX1-216ENST00000558469 GPR65Q8IYL9 337 aa10.21□□□□□ -0.77
CUX1-216ENST00000558469 DCP1BQ8IZD4 617 aaKnown RBP10.21□□□□□ -0.77
CUX1-216ENST00000558469 MYCBPAPQ8TBZ2 947 aa10.21□□□□□ -0.77
CUX1-216ENST00000558469 SLC20A1Q8WUM9 679 aa10.21□□□□□ -0.77
CUX1-216ENST00000558469 ZNF606Q8WXB4 792 aa10.21□□□□□ -0.77
CUX1-216ENST00000558469 CYFIP2Q96F07 1278 aa10.21□□□□□ -0.77
CUX1-216ENST00000558469 PKMYT1Q99640 499 aa10.21□□□□□ -0.77
CUX1-216ENST00000558469 ZSWIM1Q9BR11 485 aa10.21□□□□□ -0.77
CUX1-216ENST00000558469 MED10Q9BTT4 135 aa10.21□□□□□ -0.77
CUX1-216ENST00000558469 ZCWPW1Q9H0M4 648 aa10.21□□□□□ -0.77
CUX1-216ENST00000558469 NGRNQ9NPE2 291 aaKnown RBP10.21□□□□□ -0.77
CUX1-216ENST00000558469 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.21□□□□□ -0.77
CUX1-216ENST00000558469 TMLHEQ9NVH6 421 aa10.21□□□□□ -0.77
CUX1-216ENST00000558469 FNIP2Q9P278 1114 aa10.21□□□□□ -0.77
CUX1-216ENST00000558469 PCDHGC5Q9Y5F6 944 aa10.21□□□□□ -0.77
CUX1-216ENST00000558469 BACE2Q9Y5Z0 518 aa10.21□□□□□ -0.77
CUX1-216ENST00000558469 MYO16Q9Y6X6 1858 aa10.21□□□□□ -0.78
CUX1-216ENST00000558469 C2orf71A6NGG8 1288 aa10.2□□□□□ -0.78
CUX1-216ENST00000558469 HIDE1A8MVS5 230 aa10.2□□□□□ -0.78
CUX1-216ENST00000558469 CLDN5O00501 218 aa10.2□□□□□ -0.78
CUX1-216ENST00000558469 SOX1O00570 391 aaPredicted RBP10.2□□□□□ -0.78
CUX1-216ENST00000558469 FSCN2O14926 492 aa10.2□□□□□ -0.78
CUX1-216ENST00000558469 MED7O43513 233 aa10.2□□□□□ -0.78
CUX1-216ENST00000558469 MMEP08473 750 aa10.2□□□□□ -0.78
CUX1-216ENST00000558469 PLEKP08567 350 aaPredicted RBP10.2□□□□□ -0.78
CUX1-216ENST00000558469 CNPP09543 421 aaKnown RBP10.2□□□□□ -0.78
CUX1-216ENST00000558469 IRS1P35568 1242 aa10.2□□□□□ -0.78
CUX1-216ENST00000558469 PRKCIP41743 596 aa10.2□□□□□ -0.78
CUX1-216ENST00000558469 NDUFV1P49821 464 aa10.2□□□□□ -0.78
CUX1-216ENST00000558469 CDR2Q01850 454 aa10.2□□□□□ -0.78
CUX1-216ENST00000558469 GPR17Q13304 367 aa10.2□□□□□ -0.78
CUX1-216ENST00000558469 MAPRE1Q15691 268 aaKnown RBP10.2□□□□□ -0.78
CUX1-216ENST00000558469 CNGA2Q16280 664 aa10.2□□□□□ -0.78
CUX1-216ENST00000558469 HGSNATQ68CP4 663 aa10.2□□□□□ -0.78
CUX1-216ENST00000558469 SLC8B1Q6J4K2 584 aa10.2□□□□□ -0.78
CUX1-216ENST00000558469 PDE12Q6L8Q7 609 aaKnown RBP10.2□□□□□ -0.78
CUX1-216ENST00000558469 RNF19BQ6ZMZ0 732 aa10.2□□□□□ -0.78
CUX1-216ENST00000558469 PALB2Q86YC2 1186 aa10.2□□□□□ -0.78
CUX1-216ENST00000558469 SPATA2LQ8IUW3 424 aaPredicted RBP10.2□□□□□ -0.78
CUX1-216ENST00000558469 MRPL43Q8N983 215 aaKnown RBP10.2□□□□□ -0.78
CUX1-216ENST00000558469 SLC2A14Q8TDB8 520 aa10.2□□□□□ -0.78
CUX1-216ENST00000558469 EPS8L1Q8TE68 723 aa10.2□□□□□ -0.78
CUX1-216ENST00000558469 DDX1Q92499 740 aaKnown RBP10.2□□□□□ -0.78
CUX1-216ENST00000558469 PCED1BQ96HM7 432 aa10.2□□□□□ -0.78
CUX1-216ENST00000558469 PGLYRP2Q96PD5 576 aa10.2□□□□□ -0.78
CUX1-216ENST00000558469 PPP1R9BQ96SB3 815 aa10.2□□□□□ -0.78
CUX1-216ENST00000558469 CHP1Q99653 195 aa10.2□□□□□ -0.78
CUX1-216ENST00000558469 AGPAT1Q99943 283 aa10.2□□□□□ -0.78
CUX1-216ENST00000558469 B3GNT5Q9BYG0 378 aa10.2□□□□□ -0.78
CUX1-216ENST00000558469 PDCL3Q9H2J4 239 aa10.2□□□□□ -0.78
CUX1-216ENST00000558469 RXFP1Q9HBX9 757 aa10.2□□□□□ -0.78
CUX1-216ENST00000558469 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.2□□□□□ -0.78
CUX1-216ENST00000558469 ARHGAP20Q9P2F6 1191 aa10.2□□□□□ -0.78
CUX1-216ENST00000558469 NOCTQ9UK39 431 aaKnown RBP10.2□□□□□ -0.78
CUX1-216ENST00000558469 IRAK3Q9Y616 596 aa10.2□□□□□ -0.78
CUX1-216ENST00000558469 BZW2Q9Y6E2 419 aaKnown RBP10.2□□□□□ -0.78
CUX1-216ENST00000558469 WDR27A2RRH5 827 aa10.19□□□□□ -0.78
CUX1-216ENST00000558469 TEX28O15482 410 aa10.19□□□□□ -0.78
CUX1-216ENST00000558469 MICAL2O94851 1124 aa10.19□□□□□ -0.78
CUX1-216ENST00000558469 CFHP08603 1231 aa10.19□□□□□ -0.78
CUX1-216ENST00000558469 CHRNB2P17787 502 aa10.19□□□□□ -0.78
CUX1-216ENST00000558469 TNFAIP3P21580 790 aa10.19□□□□□ -0.78
CUX1-216ENST00000558469 BDNFP23560 247 aa10.19□□□□□ -0.78
CUX1-216ENST00000558469 KLRC2P26717 231 aa10.19□□□□□ -0.78
CUX1-216ENST00000558469 EIF4A3P38919 411 aaKnown RBP10.19□□□□□ -0.78
CUX1-216ENST00000558469 ROR1Q01973 937 aa10.19□□□□□ -0.78
CUX1-216ENST00000558469 ADCY1Q08828 1119 aa10.19□□□□□ -0.78
CUX1-216ENST00000558469 STILQ15468 1287 aa10.19□□□□□ -0.78
CUX1-216ENST00000558469 NFE2Q16621 373 aaPredicted RBP10.19□□□□□ -0.78
CUX1-216ENST00000558469 MEA1Q16626 185 aa10.19□□□□□ -0.78
CUX1-216ENST00000558469 GOLGA7BQ2TAP0 167 aa10.19□□□□□ -0.78
CUX1-216ENST00000558469 ARHGAP17Q68EM7 881 aa10.19□□□□□ -0.78
CUX1-216ENST00000558469 LCLAT1Q6UWP7 414 aa10.19□□□□□ -0.78
CUX1-216ENST00000558469 CYP26C1Q6V0L0 522 aa10.19□□□□□ -0.78
CUX1-216ENST00000558469 C4orf50Q6ZRC1 276 aa10.19□□□□□ -0.78
CUX1-216ENST00000558469 PAQR9Q6ZVX9 377 aa10.19□□□□□ -0.78
CUX1-216ENST00000558469 ZNF571Q7Z3V5 609 aaPredicted RBP10.19□□□□□ -0.78
CUX1-216ENST00000558469 ZNF677Q86XU0 584 aa10.19□□□□□ -0.78
CUX1-216ENST00000558469 PASD1Q8IV76 773 aa10.19□□□□□ -0.78
CUX1-216ENST00000558469 LRRC8AQ8IWT6 810 aa10.19□□□□□ -0.78
CUX1-216ENST00000558469 FUKQ8N0W3 1084 aa10.19□□□□□ -0.78
CUX1-216ENST00000558469 ZNF461Q8TAF7 563 aa10.19□□□□□ -0.78
CUX1-216ENST00000558469 MYLPFQ96A32 169 aa10.19□□□□□ -0.78
CUX1-216ENST00000558469 KLHL5Q96PQ7 755 aa10.19□□□□□ -0.78
CUX1-216ENST00000558469 HNRNPABQ99729 332 aaKnown RBP10.19□□□□□ -0.78
CUX1-216ENST00000558469 BAG1Q99933 345 aaPredicted RBP10.19□□□□□ -0.78
CUX1-216ENST00000558469 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.19□□□□□ -0.784e-6■■■■□ 23.2
CUX1-216ENST00000558469 EMILIN2Q9BXX0 1053 aa10.19□□□□□ -0.78
CUX1-216ENST00000558469 RHOBTB2Q9BYZ6 727 aa10.19□□□□□ -0.78
CUX1-216ENST00000558469 LMAN2LQ9H0V9 348 aa10.19□□□□□ -0.78
CUX1-216ENST00000558469 NHEJ1Q9H9Q4 299 aaPredicted RBP10.19□□□□□ -0.78
CUX1-216ENST00000558469 SEPT11Q9NVA2 429 aaKnown RBP10.19□□□□□ -0.78
CUX1-216ENST00000558469 ABI2Q9NYB9 513 aaPredicted RBP10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms