RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 SLC38A10Q9HBR0 1119 aa14.44□□□□□ -0.1
SHMT2-226ENST00000556825 KCNN3Q9UGI6 736 aa14.44□□□□□ -0.1
SHMT2-226ENST00000556825 GOLGA8QA0A0J9YX86 632 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 MYOCOSA0A1B0GUC4 107 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 GOLGA8OA6NCC3 632 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 CFAP99D6REC4 459 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 GOLGA8NF8WBI6 632 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 GOLGA8RI6L899 631 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 CSDE1O75534 798 aaKnown RBP14.43□□□□□ -0.1
SHMT2-226ENST00000556825 MYO1DO94832 1006 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 CRTAMO95727 393 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 MYCP01106 439 aaPredicted RBP14.43□□□□□ -0.1
SHMT2-226ENST00000556825 CHRNA3P32297 505 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 ZNF135P52742 658 aaPredicted RBP14.43□□□□□ -0.1
SHMT2-226ENST00000556825 YWHAGP61981 247 aaKnown RBP eCLIP14.43□□□□□ -0.1
SHMT2-226ENST00000556825 GALNT1Q10472 559 aaPredicted RBP14.43□□□□□ -0.1
SHMT2-226ENST00000556825 NFE2Q16621 373 aaPredicted RBP14.43□□□□□ -0.1
SHMT2-226ENST00000556825 LSM12Q3MHD2 195 aaKnown RBP14.43□□□□□ -0.1
SHMT2-226ENST00000556825 CYFIP1Q7L576 1253 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 TRIM22Q8IYM9 498 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 TNIP2Q8NFZ5 429 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 TSPAN14Q8NG11 270 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 NPLOC4Q8TAT6 608 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 GSDMBQ8TAX9 411 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 CNBD2Q96M20 576 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 TP63Q9H3D4 680 aaPredicted RBP14.43□□□□□ -0.1
SHMT2-226ENST00000556825 EPS15L1Q9UBC2 864 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 TBK1Q9UHD2 729 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 ATPIF1Q9UII2 106 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 NWD2Q9ULI1 1742 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 H3BRJ5 948 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 ZNF213O14771 459 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 SLC22A1O15245 554 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 FOXP2O15409 715 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 SCO2O43819 266 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 TTC4O95801 387 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 CETPP11597 493 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 ALAS1P13196 640 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 POLR2CP19387 275 aaPredicted RBP14.43□□□□□ -0.1
SHMT2-226ENST00000556825 ANXA13P27216 316 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 CYP4A22Q5TCH4 519 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 AGAP7PQ5VUJ5 663 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 DCP2Q8IU60 420 aaKnown RBP14.43□□□□□ -0.1
SHMT2-226ENST00000556825 DDX17Q92841 729 aaKnown RBP14.43□□□□□ -0.1
SHMT2-226ENST00000556825 DCUN1D1Q96GG9 259 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 ZNF486Q96H40 463 aaPredicted RBP14.43□□□□□ -0.1
SHMT2-226ENST00000556825 ZNF496Q96IT1 587 aaPredicted RBP14.43□□□□□ -0.1
SHMT2-226ENST00000556825 ACAP3Q96P50 834 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 VPS35Q96QK1 796 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 HIPK3Q9H422 1215 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 PCYOX1Q9UHG3 505 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 AMFRQ9UKV5 643 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 STRCQ7RTU9 1775 aa14.43□□□□□ -0.1
SHMT2-226ENST00000556825 UTYO14607 1347 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 XIRP1Q702N8 1843 aaKnown RBP14.42□□□□□ -0.1
SHMT2-226ENST00000556825 ILVBLA1L0T0 632 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 FAM205CA6NFA0 338 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 A8MU76 341 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 GMNNO75496 209 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 SEC24DO94855 1032 aaPredicted RBP14.42□□□□□ -0.1
SHMT2-226ENST00000556825 RPA1P27694 616 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 BTDP43251 543 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 CPA2P48052 419 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 NPEPPSP55786 919 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 DSTNP60981 165 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 ATP2C1P98194 919 aaPredicted RBP14.42□□□□□ -0.1
SHMT2-226ENST00000556825 KLHL30Q0D2K2 578 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 TFCP2Q12800 502 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 NR1H3Q13133 447 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 PTK2BQ14289 1009 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 EFHC1Q5JVL4 640 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 FAM83BQ5T0W9 1011 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 GALNT13Q8IUC8 556 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 PPM1KQ8N3J5 372 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 TERB1Q8NA31 727 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 WNK4Q96J92 1243 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 CFAP57Q96MR6 1250 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 C17orf80Q9BSJ5 609 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 MRPL9Q9BYD2 267 aaKnown RBP14.42□□□□□ -0.1
SHMT2-226ENST00000556825 MROQ9BYG7 248 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 HOXD1Q9GZZ0 328 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 PPP1R1BQ9UD71 204 aaPredicted RBP14.42□□□□□ -0.1
SHMT2-226ENST00000556825 SMG5Q9UPR3 1016 aaKnown RBP14.42□□□□□ -0.1
SHMT2-226ENST00000556825 INPP5FQ9Y2H2 1132 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 AP4B1Q9Y6B7 739 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 A0A0G2JND7 137 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 PSMD12O00232 456 aaPredicted RBP14.42□□□□□ -0.1
SHMT2-226ENST00000556825 KCNQ3O43525 872 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 GABBR2O75899 941 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 DEXIO95424 95 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 C8BP07358 591 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 BMXP51813 675 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 GNG2P59768 71 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 ITGADQ13349 1161 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 EEPD1Q7L9B9 569 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 PLPP6Q8IY26 295 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 TTC5Q8N0Z6 440 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 ISOC1Q96CN7 298 aa14.42□□□□□ -0.1
SHMT2-226ENST00000556825 RIOK1Q9BRS2 568 aaKnown RBP14.42□□□□□ -0.1
SHMT2-226ENST00000556825 FBXO6Q9NRD1 293 aaPredicted RBP14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms